Literature DB >> 8563641

Structural similarities in the noncatalytic domains of phenylalanyl-tRNA and biotin synthetases.

M Safro1, L Mosyak.   

Abstract

Detailed comparison between the structures of the Escherichia coli biotin synthetase/repressor protein (BirA) and the recently solved Thermus thermophilus phenylalanyl-tRNA synthetase (PheRS) reveals significant similarities outside their respective catalytic domains. These comprise a DNA-binding alpha+beta domain and an Src-homology 3 (SH3)-like domain that were observed in both enzymes. This similarity provides a novel example in which all domains of one multidomain protein appear to be constituents of the other multidomain protein and supports a concept of a common ancestor for two different synthetase families.

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Year:  1995        PMID: 8563641      PMCID: PMC2143022          DOI: 10.1002/pro.5560041122

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  14 in total

1.  Escherichia coli biotin holoenzyme synthetase/bio repressor crystal structure delineates the biotin- and DNA-binding domains.

Authors:  K P Wilson; L M Shewchuk; R G Brennan; A J Otsuka; B W Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-01       Impact factor: 11.205

2.  Structural similarity of DNA-binding domains of bacteriophage repressors and the globin core.

Authors:  S Subbiah; D V Laurents; M Levitt
Journal:  Curr Biol       Date:  1993-03       Impact factor: 10.834

3.  A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 A.

Authors:  S Cusack; C Berthet-Colominas; M Härtlein; N Nassar; R Leberman
Journal:  Nature       Date:  1990-09-20       Impact factor: 49.962

4.  Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5.

Authors:  K L Clark; E D Halay; E Lai; S K Burley
Journal:  Nature       Date:  1993-07-29       Impact factor: 49.962

5.  An aminoacyl tRNA synthetase binds to a specific DNA sequence and regulates its gene transcription.

Authors:  S D Putney; P Schimmel
Journal:  Nature       Date:  1981-06-25       Impact factor: 49.962

6.  Escherichia coli phenylalanyl-tRNA synthetase operon is controlled by attenuation in vivo.

Authors:  M Springer; M Trudel; M Graffe; J Plumbridge; G Fayat; J F Mayaux; C Sacerdot; S Blanquet; M Grunberg-Manago
Journal:  J Mol Biol       Date:  1983-12-15       Impact factor: 5.469

7.  Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp).

Authors:  M Ruff; S Krishnaswamy; M Boeglin; A Poterszman; A Mitschler; A Podjarny; B Rees; J C Thierry; D Moras
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

8.  The crystal structure of the lysyl-tRNA synthetase (LysU) from Escherichia coli.

Authors:  S Onesti; A D Miller; P Brick
Journal:  Structure       Date:  1995-02-15       Impact factor: 5.006

9.  Structure of the phenylalanyl-tRNA synthetase genes from Thermus thermophilus HB8 and their expression in Escherichia coli.

Authors:  R Kreutzer; V Kruft; E V Bobkova; O I Lavrik; M Sprinzl
Journal:  Nucleic Acids Res       Date:  1992-08-25       Impact factor: 16.971

10.  Structure of catabolite gene activator protein at 2.9 A resolution suggests binding to left-handed B-DNA.

Authors:  D B McKay; T A Steitz
Journal:  Nature       Date:  1981-04-30       Impact factor: 49.962

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  5 in total

1.  Determinants of the SRC homology domain 3-like fold.

Authors:  J Alejandro D'Aquino; Dagmar Ringe
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

2.  A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P.

Authors:  Tatsuo Yanagisawa; Tomomi Sumida; Ryohei Ishii; Chie Takemoto; Shigeyuki Yokoyama
Journal:  Nat Struct Mol Biol       Date:  2010-08-22       Impact factor: 15.369

Review 3.  Emergence and evolution.

Authors:  Tammy J Bullwinkle; Michael Ibba
Journal:  Top Curr Chem       Date:  2014

4.  Expression of a gene encoding a tRNA synthetase-like protein is enhanced in tumorigenic human myeloid leukemia cells and is cell cycle stage- and differentiation-dependent.

Authors:  S Sen; H Zhou; T Ripmaster; W N Hittelman; P Schimmel; R A White
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-10       Impact factor: 11.205

5.  Common peptides study of aminoacyl-tRNA synthetases.

Authors:  Assaf Gottlieb; Milana Frenkel-Morgenstern; Mark Safro; David Horn
Journal:  PLoS One       Date:  2011-05-27       Impact factor: 3.240

  5 in total

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