Literature DB >> 8332212

Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5.

K L Clark1, E D Halay, E Lai, S K Burley.   

Abstract

The three-dimensional structure of an HNF-3/fork head DNA-recognition motif complexed with DNA has been determined by X-ray crystallography at 2.5 A resolution. This alpha/beta protein binds B-DNA as a monomer, through interactions with the DNA backbone and through both direct and water-mediated major and minor groove base contacts, inducing a 13 degrees bend. The transcription factor fold is very similar to the structure of histone H5. In its amino-terminal half, three alpha-helices adopt a compact structure that presents the third helix to the major groove. The remainder of the protein includes a twisted, antiparallel beta-structure and random coil that interacts with the minor groove.

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Year:  1993        PMID: 8332212     DOI: 10.1038/364412a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  428 in total

1.  The winged-helix/forkhead protein myocyte nuclear factor beta (MNF-beta) forms a co-repressor complex with mammalian sin3B.

Authors:  Q Yang; Y Kong; B Rothermel; D J Garry; R Bassel-Duby; R S Williams
Journal:  Biochem J       Date:  2000-01-15       Impact factor: 3.857

2.  The solution structure of the Zalpha domain of the human RNA editing enzyme ADAR1 reveals a prepositioned binding surface for Z-DNA.

Authors:  M Schade; C J Turner; R Kühne; P Schmieder; K Lowenhaupt; A Herbert; A Rich; H Oschkinat
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

3.  A thermostable platform for transcriptional regulation: the DNA-binding properties of two Lrp homologs from the hyperthermophilic archaeon Methanococcus jannaschii.

Authors:  M Ouhammouch; E P Geiduschek
Journal:  EMBO J       Date:  2001-01-15       Impact factor: 11.598

4.  Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP.

Authors:  N Zheng; E Fraenkel; C O Pabo; N P Pavletich
Journal:  Genes Dev       Date:  1999-03-15       Impact factor: 11.361

5.  Crystal structure of Thermotoga maritima 0065, a member of the IclR transcriptional factor family.

Authors:  Rong-Guang Zhang; Youngchang Kim; Tatiana Skarina; Steven Beasley; Roman Laskowski; Cheryl Arrowsmith; Aled Edwards; Andrzej Joachimiak; Alexei Savchenko
Journal:  J Biol Chem       Date:  2002-03-04       Impact factor: 5.157

6.  Mechanisms controlling differential promoter-occupancy by the yeast forkhead proteins Fkh1p and Fkh2p: implications for regulating the cell cycle and differentiation.

Authors:  P C Hollenhorst; G Pietz; C A Fox
Journal:  Genes Dev       Date:  2001-09-15       Impact factor: 11.361

7.  Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF.

Authors:  Katsuhiko Kamada; Robert G Roeder; Stephen K Burley
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-18       Impact factor: 11.205

8.  BF-1 interferes with transforming growth factor beta signaling by associating with Smad partners.

Authors:  C Dou; J Lee; B Liu; F Liu; J Massague; S Xuan; E Lai
Journal:  Mol Cell Biol       Date:  2000-09       Impact factor: 4.272

Review 9.  Setting appropriate boundaries: fate, patterning and competence at the neural plate border.

Authors:  Andrew K Groves; Carole LaBonne
Journal:  Dev Biol       Date:  2013-12-07       Impact factor: 3.582

10.  Mechanisms of inhibition of nuclear hormone receptor-dependent hepatitis B virus replication by hepatocyte nuclear factor 3beta.

Authors:  Hong Tang; Alan McLachlan
Journal:  J Virol       Date:  2002-09       Impact factor: 5.103

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