Literature DB >> 8548818

A molecular switch in a replication machine defined by an internal competition for protein rings.

V Naktinis1, J Turner, M O'Donnell.   

Abstract

Replication machines use ring-shaped clamps that encircle DNA to tether the polymerase to the chromosome. The clamp is assembled on DNA by a clamp loader. This report shows that the polymerase and clamp loader coordinate their actions with the clamp by competing for it through overlapping binding sites. The competition is modulated by DNA. In the absence of DNA, the clamp associates with the clamp loader. But after the clamp is placed on DNA, the polymerase develops a tight grip on the clamp and out-competes the clamp loader. After replication of the template, the polymerase looses affinity for the clamp. Now the clamp loader regains access to the clamp and removes it from DNA thus recycling it for future use.

Mesh:

Substances:

Year:  1996        PMID: 8548818     DOI: 10.1016/s0092-8674(00)81000-4

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  49 in total

1.  Impairment of lagging strand synthesis triggers the formation of a RuvABC substrate at replication forks.

Authors:  M J Flores; H Bierne; S D Ehrlich; B Michel
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

2.  Escherichia coli DNA polymerase III tau- and gamma-subunit conserved residues required for activity in vivo and in vitro.

Authors:  J R Walker; C Hervas; J D Ross; A Blinkova; M J Walbridge; E J Pumarega; M O Park; H R Neely
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

Review 3.  Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I.

Authors:  F J López de Saro; M O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

4.  A peptide switch regulates DNA polymerase processivity.

Authors:  Francisco J López de Saro; Roxana E Georgescu; Mike O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-20       Impact factor: 11.205

5.  Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair.

Authors:  Francisco J López de Saro; Roxana E Georgescu; Myron F Goodman; Mike O'Donnell
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

6.  Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the beta-clamp.

Authors:  Karen A Bunting; S Mark Roe; Laurence H Pearl
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

7.  Protein trafficking on sliding clamps.

Authors:  Francisco López de Saro; Roxana E Georgescu; Frank Leu; Mike O'Donnell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-01-29       Impact factor: 6.237

8.  Conservation of the Escherichia coli dnaX programmed ribosomal frameshift signal in Salmonella typhimurium.

Authors:  A Blinkova; M F Burkart; T D Owens; J R Walker
Journal:  J Bacteriol       Date:  1997-07       Impact factor: 3.490

9.  A Primase-Induced Conformational Switch Controls the Stability of the Bacterial Replisome.

Authors:  Enrico Monachino; Slobodan Jergic; Jacob S Lewis; Zhi-Qiang Xu; Allen T Y Lo; Valerie L O'Shea; James M Berger; Nicholas E Dixon; Antoine M van Oijen
Journal:  Mol Cell       Date:  2020-05-27       Impact factor: 17.970

10.  Biochemical basis of SOS-induced mutagenesis in Escherichia coli: reconstitution of in vitro lesion bypass dependent on the UmuD'2C mutagenic complex and RecA protein.

Authors:  M Tang; I Bruck; R Eritja; J Turner; E G Frank; R Woodgate; M O'Donnell; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

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