Literature DB >> 32464091

A Primase-Induced Conformational Switch Controls the Stability of the Bacterial Replisome.

Enrico Monachino1, Slobodan Jergic2, Jacob S Lewis2, Zhi-Qiang Xu2, Allen T Y Lo2, Valerie L O'Shea3, James M Berger3, Nicholas E Dixon4, Antoine M van Oijen5.   

Abstract

Recent studies of bacterial DNA replication have led to a picture of the replisome as an entity that freely exchanges DNA polymerases and displays intermittent coupling between the helicase and polymerase(s). Challenging the textbook model of the polymerase holoenzyme acting as a stable complex coordinating the replisome, these observations suggest a role of the helicase as the central organizing hub. We show here that the molecular origin of this newly found plasticity lies in the 500-fold increase in strength of the interaction between the polymerase holoenzyme and the replicative helicase upon association of the primase with the replisome. By combining in vitro ensemble-averaged and single-molecule assays, we demonstrate that this conformational switch operates during replication and promotes recruitment of multiple holoenzymes at the fork. Our observations provide a molecular mechanism for polymerase exchange and offer a revised model for the replication reaction that emphasizes its stochasticity.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DNA replication; DnaB helicase; DnaG primase; clamp loader-helicase interaction; conformational switch; polymerase turnover

Mesh:

Substances:

Year:  2020        PMID: 32464091      PMCID: PMC7335327          DOI: 10.1016/j.molcel.2020.04.037

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  75 in total

1.  Crosstalk between primase subunits can act to regulate primer synthesis in trans.

Authors:  Jacob E Corn; Paul J Pease; Greg L Hura; James M Berger
Journal:  Mol Cell       Date:  2005-11-11       Impact factor: 17.970

2.  Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase.

Authors:  Scott Bailey; William K Eliason; Thomas A Steitz
Journal:  Science       Date:  2007-10-19       Impact factor: 47.728

3.  The extreme C terminus of primase is required for interaction with DnaB at the replication fork.

Authors:  K Tougu; K J Marians
Journal:  J Biol Chem       Date:  1996-08-30       Impact factor: 5.157

4.  Cloning of the Escherichia coli dnaZX region and identification of its products.

Authors:  D A Mullin; C L Woldringh; J M Henson; J R Walker
Journal:  Mol Gen Genet       Date:  1983

5.  Efficient in vitro replication of double-stranded DNA templates by a purified T4 bacteriophage replication system.

Authors:  N K Sinha; C F Morris; B M Alberts
Journal:  J Biol Chem       Date:  1980-05-10       Impact factor: 5.157

6.  Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.

Authors:  Ernesto Arias-Palomo; Neha Puri; Valerie L O'Shea Murray; Qianyun Yan; James M Berger
Journal:  Mol Cell       Date:  2019-02-20       Impact factor: 17.970

7.  Inhibition of protein interactions with the beta 2 sliding clamp of Escherichia coli DNA polymerase III by peptides from beta 2-binding proteins.

Authors:  Gene Wijffels; Brian P Dalrymple; Pavel Prosselkov; Kritaya Kongsuwan; V Chandana Epa; Penelope E Lilley; Slobodan Jergic; Jens Buchardt; Susan E Brown; Paul F Alewood; Philip A Jennings; Nicholas E Dixon
Journal:  Biochemistry       Date:  2004-05-18       Impact factor: 3.162

8.  Oligomeric structure of Escherichia coli primary replicative helicase DnaB protein.

Authors:  W Bujalowski; M M Klonowska; M J Jezewska
Journal:  J Biol Chem       Date:  1994-12-16       Impact factor: 5.157

9.  A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme.

Authors:  R H Scheuermann; H Echols
Journal:  Proc Natl Acad Sci U S A       Date:  1984-12       Impact factor: 11.205

10.  Mapping protein-protein interactions within a stable complex of DNA primase and DnaB helicase from Bacillus stearothermophilus.

Authors:  L E Bird; H Pan; P Soultanas; D B Wigley
Journal:  Biochemistry       Date:  2000-01-11       Impact factor: 3.162

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  4 in total

1.  The Alarmone (p)ppGpp Regulates Primer Extension by Bacterial Primase.

Authors:  Christina N Giramma; McKenna B DeFoer; Jue D Wang
Journal:  J Mol Biol       Date:  2021-08-10       Impact factor: 6.151

2.  Single-Molecule Dynamics at a Bacterial Replication Fork after Nutritional Downshift or Chemically Induced Block in Replication.

Authors:  Rogelio Hernández-Tamayo; Hannah Schmitz; Peter L Graumann
Journal:  mSphere       Date:  2021-01-27       Impact factor: 4.389

3.  Targeted chromosomal Escherichia coli:dnaB exterior surface residues regulate DNA helicase behavior to maintain genomic stability and organismal fitness.

Authors:  Megan S Behrmann; Himasha M Perera; Joy M Hoang; Trisha A Venkat; Bryan J Visser; David Bates; Michael A Trakselis
Journal:  PLoS Genet       Date:  2021-11-12       Impact factor: 5.917

4.  Theoretical Development of DnaG Primase as a Novel Narrow-Spectrum Antibiotic Target.

Authors:  Jessica Periago; Clarissa Mason; Mark A Griep
Journal:  ACS Omega       Date:  2022-03-01
  4 in total

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