Literature DB >> 8525549

The relevance of dose-fractionation in tomography of radiation-sensitive specimens.

B F McEwen1, K H Downing, R M Glaeser.   

Abstract

It is commonly assumed that the number of projections required for single-axis tomography precludes its application to most beam-labile specimens. However, Hegerl and Hoppe have pointed out that the total dose required to achieve statistical significance for each voxel of a computed 3D reconstruction is the same as that required to obtain a single 2D image of that isolated voxel, at the same level of statistical significance. Thus a statistically significant 3D image can be computed from statistically insignificant projections, as long as the total dose that is distributed among these projections is high enough that it would have resulted in a statistically significant projection, if applied to only one image. We have tested this critical theorem by simulating the tomographic reconstruction of a realistic 3D model created from an electron micrograph. The simulations verify the basic conclusions of the theorem and extend its validity to the experimentally more realistic conditions of high absorption, signal-dependent noise, varying specimen contrast and missing angular range. Individual projections in the series of fractionated-dose images could be aligned by cross-correlation because they contained significant information derived from the summation of features from different depths in the structure. This latter information is generally not useful for structural interpretation prior to 3D reconstruction, owing to the complexity of most specimens investigated by single-axis tomography. These results demonstrate that it is feasible to use single-axis tomography with soft X-ray and electron microscopy of frozen-hydrated specimens.

Mesh:

Year:  1995        PMID: 8525549     DOI: 10.1016/0304-3991(95)00082-8

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  33 in total

1.  Microscopy: A new phase for X-ray imaging.

Authors:  Henry N Chapman
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

2.  Biological imaging by soft x-ray diffraction microscopy.

Authors:  David Shapiro; Pierre Thibault; Tobias Beetz; Veit Elser; Malcolm Howells; Chris Jacobsen; Janos Kirz; Enju Lima; Huijie Miao; Aaron M Neiman; David Sayre
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-11       Impact factor: 11.205

3.  On the feasibility of visualizing ultrasmall gold labels in biological specimens by STEM tomography.

Authors:  A A Sousa; M A Aronova; Y C Kim; L M Dorward; G Zhang; R D Leapman
Journal:  J Struct Biol       Date:  2007-06-28       Impact factor: 2.867

Review 4.  Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future.

Authors:  Kenneth A Taylor; Robert M Glaeser
Journal:  J Struct Biol       Date:  2008-06-19       Impact factor: 2.867

5.  Structure and bonding at the atomic scale by scanning transmission electron microscopy.

Authors:  David A Muller
Journal:  Nat Mater       Date:  2009-04       Impact factor: 43.841

6.  Alignment of low-dose X-ray fluorescence tomography images using differential phase contrast.

Authors:  Young Pyo Hong; Sophie-Charlotte Gleber; Thomas V O'Halloran; Emily L Que; Reiner Bleher; Stefan Vogt; Teresa K Woodruff; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2013-12-12       Impact factor: 2.616

Review 7.  Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.

Authors:  Robert M Glaeser; Richard J Hall
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

8.  Electron tomography of ice-embedded prokaryotic cells.

Authors:  R Grimm; H Singh; R Rachel; D Typke; W Zillig; W Baumeister
Journal:  Biophys J       Date:  1998-02       Impact factor: 4.033

Review 9.  Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Authors:  Axel A Ekman; Jian-Hua Chen; Jessica Guo; Gerry McDermott; Mark A Le Gros; Carolyn A Larabell
Journal:  Biol Cell       Date:  2016-11-14       Impact factor: 4.458

Review 10.  Opportunities in multidimensional trace metal imaging: taking copper-associated disease research to the next level.

Authors:  Stefan Vogt; Martina Ralle
Journal:  Anal Bioanal Chem       Date:  2012-10-19       Impact factor: 4.142

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