Literature DB >> 8449173

Protein dynamics: conformational disorder, vibrational coupling and anharmonicity in deoxy-hemoglobin and myoglobin.

A Cupane1, M Leone, E Vitrano.   

Abstract

In this work we study the temperature dependence of the Soret band lineshape of deoxymyoglobin and deoxyhemoglobin, in the range 300-20 K. To fit the measured spectra we use an approach originally proposed by Champion and coworkers (Srajer et al. 1986; Srajer and Champion 1991). The band profile is modelled as a Voigt function that accounts for the coupling with low frequency vibrational modes, whereas the coupling with high frequency modes is responsible for the vibronic structure of the spectra. Moreover, owing to the position of the iron atom out of the mean heme plane, inhomogeneous broadening brings about a non-Gaussian distribution of 0-0 electronic transition frequencies. The reported analysis enables us to isolate the various contributions to the overall bandwidth, and their temperature dependence points out the relevance of low frequency vibrations and of large scale anharmonic motions starting at temperatures higher than 170 K. Information on the mean iron-heme plane distance and on its temperature dependence, as well as on the heme pocket conformational disorder, is also obtained.

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Year:  1993        PMID: 8449173     DOI: 10.1007/bf00185865

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  18 in total

1.  Protein dynamics. Vibrational coupling, spectral broadening mechanisms, and anharmonicity effects in carbonmonoxy heme proteins studied by the temperature dependence of the Soret band lineshape.

Authors:  A Di Pace; A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Biophys J       Date:  1992-08       Impact factor: 4.033

2.  Spectral broadening in biomolecules.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-09-08       Impact factor: 9.161

3.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

4.  Strong vibronic coupling in heme proteins.

Authors:  M Leone; A Cupane; E Vitrano; L Cordone
Journal:  Biophys Chem       Date:  1992-02       Impact factor: 2.352

5.  Inhomogeneous broadening in spectral bands of carbonmonoxymyoglobin. The connection between spectral and functional heterogeneity.

Authors:  P Ormos; A Ansari; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; T B Sauke; P J Steinbach; R D Young
Journal:  Biophys J       Date:  1990-02       Impact factor: 4.033

6.  Structural and dynamic properties of the heme pocket in myoglobin probed by optical spectroscopy.

Authors:  A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Biopolymers       Date:  1988-12       Impact factor: 2.505

7.  Dynamic properties of oxy- and carbonmonoxyhemoglobin probed by optical spectroscopy in the temperature range of 300-20 K.

Authors:  M Leone; A Cupane; E Vitrano; L Cordone
Journal:  Biopolymers       Date:  1987-10       Impact factor: 2.505

8.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

9.  Protein dynamics. Comparative investigation on heme-proteins with different physiological roles.

Authors:  E E Di Iorio; U R Hiltpold; D Filipovic; K H Winterhalter; E Gratton; E Vitrano; A Cupane; M Leone; L Cordone
Journal:  Biophys J       Date:  1991-03       Impact factor: 4.033

10.  Rebinding and relaxation in the myoglobin pocket.

Authors:  A Ansari; J Berendzen; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; J B Johnson; P Ormos; T B Sauke
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

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  12 in total

1.  Influence of static and dynamic disorder on the visible and infrared absorption spectra of carbonmonoxy horseradish peroxidase.

Authors:  A D Kaposi; J M Vanderkooi; W W Wright; J Fidy; S S Stavrov
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Low temperature optical spectroscopy of low-spin ferric hemeproteins.

Authors:  M Leone; A Cupane; L Cordone
Journal:  Eur Biophys J       Date:  1996       Impact factor: 1.733

3.  Temperature dependence of Q-band electron paramagnetic resonance spectra of nitrosyl heme proteins.

Authors:  M Flores; E Wajnberg; G Bemski
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

4.  Structural fluctuations of myoglobin from normal-modes, Mössbauer, Raman, and absorption spectroscopy.

Authors:  B Melchers; E W Knapp; F Parak; L Cordone; A Cupane; M Leone
Journal:  Biophys J       Date:  1996-05       Impact factor: 4.033

5.  Iron-histidine resonance Raman band of deoxyheme proteins: effects of anharmonic coupling and glass-liquid phase transition.

Authors:  A Bitler; S S Stavrov
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

6.  Influence of glycerol on the structure and redox properties of horse heart cytochrome c. A circular dichroism and electrochemical study.

Authors:  G De Sanctis; A Maranesi; T Ferri; A Poscia; F Ascoli; R Santucci
Journal:  J Protein Chem       Date:  1996-10

Review 7.  Low temperature optical absorption spectroscopy: an approach to the study of stereodynamic properties of hemeproteins.

Authors:  A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Eur Biophys J       Date:  1995       Impact factor: 1.733

8.  Structure-dynamics-function relationships in Asian elephant (Elephas maximus) myoglobin. An optical spectroscopy and flash photolysis study on functionally important motions.

Authors:  A Cupane; M Leone; E Vitrano; L Cordone; U R Hiltpold; K H Winterhalter; W Yu; E E Di Iorio
Journal:  Biophys J       Date:  1993-12       Impact factor: 4.033

9.  Structural and dynamic properties of the homodimeric hemoglobin from Scapharca inaequivalvis Thr-72-->Ile mutant: molecular dynamics simulation, low temperature visible absorption spectroscopy, and resonance Raman spectroscopy studies.

Authors:  M Falconi; A Desideri; A Cupane; M Leone; G Ciccotti; E S Peterson; J M Friedman; A Gambacurta; F Ascoli
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

10.  Stereodynamic properties of the cooperative homodimeric Scapharca inaequivalvis hemoglobin studied through optical absorption spectroscopy and ligand rebinding kinetics.

Authors:  A Boffi; D Verzili; E Chiancone; M Leone; A Cupane; V Militello; E Vitrano; L Cordone; W Yu; E E Di Iorio
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

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