Literature DB >> 7819503

Stereodynamic properties of the cooperative homodimeric Scapharca inaequivalvis hemoglobin studied through optical absorption spectroscopy and ligand rebinding kinetics.

A Boffi1, D Verzili, E Chiancone, M Leone, A Cupane, V Militello, E Vitrano, L Cordone, W Yu, E E Di Iorio.   

Abstract

The study of the thermal evolution of the Soret band in heme proteins has proved to be a useful tool to understand their stereodynamic properties; moreover, it enables one to relate protein matrix fluctuations and functional behavior when carried out in combination with kinetic experiments on carbon monoxide rebinding after flash photolysis. In this work, we report the thermal evolution of the Soret band of deoxy, carbonmonoxy, and nitric oxide derivatives of the cooperative homodimeric Scapharca inaequivalvis hemoglobin in the temperature range 10-300 K and the carbon monoxide rebinding kinetics after flash photolysis in the temperature range 60-200 K. The two sets of results indicate that Scapharca hemoglobin has a very rigid protein structure compared with other hemeproteins. This feature is brought out i) by the absence of nonharmonic contributions to the soft modes coupled to the Soret band in the liganded derivatives, and ii) by the almost "in plane" position of the iron atom in the photoproduct obtained approximately 10(-8) s after dissociating the bound carbon monoxide molecule at 15 K.

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Year:  1994        PMID: 7819503      PMCID: PMC1225533          DOI: 10.1016/S0006-3495(94)80645-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  23 in total

1.  Protein dynamics. Vibrational coupling, spectral broadening mechanisms, and anharmonicity effects in carbonmonoxy heme proteins studied by the temperature dependence of the Soret band lineshape.

Authors:  A Di Pace; A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Biophys J       Date:  1992-08       Impact factor: 4.033

2.  Spectral broadening in biomolecules.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-09-08       Impact factor: 9.161

3.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

Review 4.  Protein dynamics. An overview on flash-photolysis over broad temperature ranges.

Authors:  E E Di Iorio
Journal:  FEBS Lett       Date:  1992-07-27       Impact factor: 4.124

5.  Inhomogeneous broadening in spectral bands of carbonmonoxymyoglobin. The connection between spectral and functional heterogeneity.

Authors:  P Ormos; A Ansari; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; T B Sauke; P J Steinbach; R D Young
Journal:  Biophys J       Date:  1990-02       Impact factor: 4.033

6.  Metastable CO binding sites in the photoproduct of a novel cooperative dimeric hemoglobin.

Authors:  S Song; L Rothberg; D L Rousseau; A Boffi; E Chiancone
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

7.  Dimeric and tetrameric hemoglobins from the mollusc Scapharca inaequivalvis. Structural and functional properties.

Authors:  E Chiancone; P Vecchini; D Verzili; F Ascoli; E Antonini
Journal:  J Mol Biol       Date:  1981-11-05       Impact factor: 5.469

8.  Protein dynamics. Comparative investigation on heme-proteins with different physiological roles.

Authors:  E E Di Iorio; U R Hiltpold; D Filipovic; K H Winterhalter; E Gratton; E Vitrano; A Cupane; M Leone; L Cordone
Journal:  Biophys J       Date:  1991-03       Impact factor: 4.033

9.  The 2.4-A crystal structure of Scapharca dimeric hemoglobin. Cooperativity based on directly communicating hemes at a novel subunit interface.

Authors:  W E Royer; W A Hendrickson; E Chiancone
Journal:  J Biol Chem       Date:  1989-12-15       Impact factor: 5.157

10.  Heme-heme interactions in a homodimeric cooperative hemoglobin. Evidence from transient Raman scattering.

Authors:  D L Rousseau; S Song; J M Friedman; A Boffi; E Chiancone
Journal:  J Biol Chem       Date:  1993-03-15       Impact factor: 5.157

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  12 in total

1.  Influence of static and dynamic disorder on the visible and infrared absorption spectra of carbonmonoxy horseradish peroxidase.

Authors:  A D Kaposi; J M Vanderkooi; W W Wright; J Fidy; S S Stavrov
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Low temperature optical spectroscopy of low-spin ferric hemeproteins.

Authors:  M Leone; A Cupane; L Cordone
Journal:  Eur Biophys J       Date:  1996       Impact factor: 1.733

3.  Near-infrared spectra of Scapharca homodimeric hemoglobin: characterization of the deoxy and photodissociated derivatives.

Authors:  J Huang; M Leone; A Boffi; J M Friedman; E Chiancone
Journal:  Biophys J       Date:  1996-06       Impact factor: 4.033

4.  Dynamic properties of monomeric insect erythrocruorin III from Chironomus thummi-thummi: relationships between structural flexibility and functional complexity.

Authors:  E E Di Iorio; I Tavernelli; W Yu
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

5.  Local dynamics of DNA probed with optical absorption spectroscopy of bound ethidium bromide.

Authors:  A Cupane; C Bologna; O Rizzo; E Vitrano; L Cordone
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

6.  Iron-histidine resonance Raman band of deoxyheme proteins: effects of anharmonic coupling and glass-liquid phase transition.

Authors:  A Bitler; S S Stavrov
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

7.  Size-Dependent Interplay of Volume Exclusion Versus Soft Interactions: Cytochrome c in Macromolecular Crowded Environment.

Authors:  Zahoor Ahmad Parray; Faizan Ahmad; Anis Ahmad Chaudhary; Hassan Ahmad Rudayni; Mohammed Al-Zharani; Md Imtaiyaz Hassan; Asimul Islam
Journal:  Front Mol Biosci       Date:  2022-05-25

8.  Structural and dynamic properties of the homodimeric hemoglobin from Scapharca inaequivalvis Thr-72-->Ile mutant: molecular dynamics simulation, low temperature visible absorption spectroscopy, and resonance Raman spectroscopy studies.

Authors:  M Falconi; A Desideri; A Cupane; M Leone; G Ciccotti; E S Peterson; J M Friedman; A Gambacurta; F Ascoli
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

9.  Effects of mutations on the molecular dynamics of oxygen escape from the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Kevin Trujillo; Tasso Papagiannopoulos; Kenneth W Olsen
Journal:  F1000Res       Date:  2015-03-13

10.  Biophysical Properties of Lumbricus terrestris Erythrocruorin and Its Potential Use as a Red Blood Cell Substitute.

Authors:  Jacob Elmer; Andre F Palmer
Journal:  J Funct Biomater       Date:  2012-01-06
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