Literature DB >> 8445657

Structure of hen lysozyme in solution.

L J Smith1, M J Sutcliffe, C Redfield, C M Dobson.   

Abstract

The structure of the 129-residue protein hen lysozyme has been determined in solution by two-dimensional 1H nuclear magnetic resonance methods. 1158 NOE distance restraints, and 68 phi and 24 chi 1 dihedral angle restraints were employed in conjunction with distance geometry and simulated annealing procedures. The overall C alpha root-mean-square deviation from the average for 16 calculated structures is 1.8(+/- 0.2) A, but excluding 14 residues in exposed disordered regions, this value reduces to 1.3(+/- 0.2) A. Regions of secondary structure, and the four alpha-helices in particular, are well defined (C alpha root-mean-square deviation 0.8(+/- 0.3) A for helices). The main-chain fold is closely similar to structures of the protein in the crystalline state. Furthermore, many of the internal side-chains are found in well-defined conformational states in the solution structures, and these correspond well with the conformational states found in the crystal. The general high level of definition of mainchain and many internal side-chains in the solution structures is reinforced by the results of an analysis of coupling constants and ring current shifts. Many side-chains on the surface, however, are highly disordered amongst the set of solution structures. In certain cases this disorder has been shown to be dynamic in origin by the examination of 3J alpha beta coupling constants.

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Year:  1993        PMID: 8445657     DOI: 10.1006/jmbi.1993.1097

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  20 in total

1.  Comparison of the kinetics of S-S bond, secondary structure, and active site formation during refolding of reduced denatured hen egg white lysozyme.

Authors:  P Roux; M Ruoppolo; A F Chaffotte; M E Goldberg
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

2.  A refined solution structure of hen lysozyme determined using residual dipolar coupling data.

Authors:  H Schwalbe; S B Grimshaw; A Spencer; M Buck; J Boyd; C M Dobson; C Redfield; L J Smith
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

3.  Molecular dynamics simulation of thionated hen egg white lysozyme.

Authors:  Wei Huang; Andreas P Eichenberger; Wilfred F van Gunsteren
Journal:  Protein Sci       Date:  2012-06-25       Impact factor: 6.725

4.  Temperature dependence of 1H chemical shifts in proteins.

Authors:  N J Baxter; M P Williamson
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

5.  Validation of the GROMOS force-field parameter set 45Alpha3 against nuclear magnetic resonance data of hen egg lysozyme.

Authors:  T A Soares; X Daura; C Oostenbrink; L J Smith; W F van Gunsteren
Journal:  J Biomol NMR       Date:  2004-12       Impact factor: 2.835

6.  Heterologous expression of hen egg white lysozyme and resonance assignment of tryptophan side chains in its non-native states.

Authors:  Christian Schlörb; Katrin Ackermann; Christian Richter; Julia Wirmer; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

7.  Estimating the accuracy of protein structures using residual dipolar couplings.

Authors:  Katya Simon; Jun Xu; Chinpal Kim; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

8.  Validation of the 53A6 GROMOS force field.

Authors:  Chris Oostenbrink; Thereza A Soares; Nico F A van der Vegt; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2005-04-01       Impact factor: 1.733

9.  Maximizing accuracy of RNA structure in refinement against residual dipolar couplings.

Authors:  Christina Bergonzo; Alexander Grishaev
Journal:  J Biomol NMR       Date:  2019-05-02       Impact factor: 2.835

10.  Complete 1H and non-carbonylic 13C assignments of native hen egg-white lysozyme.

Authors:  Y Wang; T C Bjorndahl; D S Wishart
Journal:  J Biomol NMR       Date:  2000-05       Impact factor: 2.835

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