Literature DB >> 8419925

Coordinated posttranscriptional control of gene expression by modular elements including Alu-like repetitive sequences.

F Vidal1, E Mougneau, N Glaichenhaus, P Vaigot, M Darmon, F Cuzin.   

Abstract

We previously reported that in rat fibroblasts, accumulation of a set of mRNAs ("pIL genes") was modulated as a function of cell growth and transformation, at a posttranscriptional stage, and by a mechanism that depends on a short nucleotide sequence containing an ID repetitive element. In mouse fibroblasts, hybridization with rat pIL probes identified mRNAs with the same pattern of expression, which did not contain ID sequences but contained a different regulatory element, encompassing a repetitive sequence of the B1 family. Expression in mouse cells of a reporter beta-globin gene carrying this element inserted in its 3' noncoding region was growth- and transformation-dependent. The nucleotide sequences of two murine and of three rat pIL cDNAs showed clear similarities in the region immediately adjacent to the ID and B1 repeats. Both the repeat and the flanking sequence were required to confer on beta-globin constructs the pattern of expression characteristic of the pIL genes. The hypothesis is presented that repetitive sequences in the eukaryotic genome might be modular parts of complex regulatory elements ensuring the coordinated expression of various mRNA species.

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Year:  1993        PMID: 8419925      PMCID: PMC45629          DOI: 10.1073/pnas.90.1.208

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Transcripts regulated during normal embryonic development and oncogenic transformation share a repetitive element.

Authors:  D Murphy; P M Brickell; D S Latchman; K Willison; P W Rigby
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

2.  Transcription of two classes of rat growth hormone gene-associated repetitive DNA: differences in activity and effects of tandem repeat structure.

Authors:  A Gutierrez-Hartmann; I Lieberburg; D Gardner; J D Baxter; G G Cathala
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

3.  Stimulation of 3T3 cells induces transcription of the c-fos proto-oncogene.

Authors:  M E Greenberg; E B Ziff
Journal:  Nature       Date:  1984 Oct 4-10       Impact factor: 49.962

4.  Cell-cycle-specific cDNAs from mammalian cells temperature sensitive for growth.

Authors:  R R Hirschhorn; P Aller; Z A Yuan; C W Gibson; R Baserga
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

5.  Complementation of a tsa mutant and replication of a recombinant DNA carrying the viral ori region in mouse cells transformed by polyoma virus.

Authors:  G Rautmann; N Glaichenhaus; Z Nahgashfar; R Breathnach; M Rassoulzadegan
Journal:  Virology       Date:  1982-10-30       Impact factor: 3.616

6.  Tumorigenic conversion of primary embryo fibroblasts requires at least two cooperating oncogenes.

Authors:  H Land; L F Parada; R A Weinberg
Journal:  Nature       Date:  1983 Aug 18-24       Impact factor: 49.962

7.  Control of neuronal gene expression.

Authors:  J G Sutcliffe; R J Milner; J M Gottesfeld; W Reynolds
Journal:  Science       Date:  1984-09-21       Impact factor: 47.728

8.  The nucleotide sequence of the ubiquitous repetitive DNA sequence B1 complementary to the most abundant class of mouse fold-back RNA.

Authors:  A S Krayev; D A Kramerov; K G Skryabin; A P Ryskov; A A Bayev; G P Georgiev
Journal:  Nucleic Acids Res       Date:  1980-03-25       Impact factor: 16.971

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  A cluster of repetitive elements within a 700 base pair region in the mouse genome.

Authors:  V F Kalb; S Glasser; D King; J B Lingrel
Journal:  Nucleic Acids Res       Date:  1983-04-11       Impact factor: 16.971

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  13 in total

1.  AtCopeg1, the unique gene originated from AtCopia95 retrotransposon family, is sensitive to external hormones and abiotic stresses.

Authors:  Ke Duan; Xiangzhen Ding; Qiong Zhang; Hong Zhu; Aihu Pan; Jianhua Huang
Journal:  Plant Cell Rep       Date:  2008-02-29       Impact factor: 4.570

2.  Reading TE leaves: new approaches to the identification of transposable element insertions.

Authors:  David A Ray; Mark A Batzer
Journal:  Genome Res       Date:  2011-06       Impact factor: 9.043

3.  Misfolded human tRNA isodecoder binds and neutralizes a 3' UTR-embedded Alu element.

Authors:  Joëlle Rudinger-Thirion; Alain Lescure; Caroline Paulus; Magali Frugier
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

4.  Identification and characterization of new human medium reiteration frequency repeats.

Authors:  J Jurka; D J Kaplan; C H Duncan; J Walichiewicz; A Milosavljevic; G Murali; J F Solus
Journal:  Nucleic Acids Res       Date:  1993-03-11       Impact factor: 16.971

5.  Evolutionary selection against change in many Alu repeat sequences interspersed through primate genomes.

Authors:  R J Britten
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-21       Impact factor: 11.205

6.  Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era.

Authors:  J Jurka; E Zietkiewicz; D Labuda
Journal:  Nucleic Acids Res       Date:  1995-01-11       Impact factor: 16.971

7.  Mg-SINE: a short interspersed nuclear element from the rice blast fungus, Magnaporthe grisea.

Authors:  P Kachroo; S A Leong; B B Chattoo
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

8.  A novel family of repeat sequences in the mouse genome responsive to retinoic acid.

Authors:  M Sam; W Wurst; L Forrester; F Vauti; H Heng; A Bernstein
Journal:  Mamm Genome       Date:  1996-10       Impact factor: 2.957

9.  Different domains regulate the human erythropoietin receptor gene transcription.

Authors:  L Maouche; J P Cartron; S Chretien
Journal:  Nucleic Acids Res       Date:  1994-02-11       Impact factor: 16.971

10.  Alu and b1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes.

Authors:  Aristotelis Tsirigos; Isidore Rigoutsos
Journal:  PLoS Comput Biol       Date:  2009-12-18       Impact factor: 4.475

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