Literature DB >> 7870583

Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era.

J Jurka1, E Zietkiewicz, D Labuda.   

Abstract

Short interspersed elements (SINEs) are ubiquitous in mammalian genomes. Remarkable variety of these repeats among placental orders indicates that most of them amplified in each lineage independently, following mammalian radiation. Here, we present an ancient family of repeats, whose sequence divergence and common occurrence among placental mammals, marsupials and monotremes indicate their amplification during the Mesozoic era. They are called MIRs for abundant Mammalian-wide Interspersed Repeats. With approximately 120,000 copies still detectable in the human genome (0.2-0.3% DNA), MIRs represent a 'fossilized' record of a major genetic event preceding the radiation of placental orders.

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Year:  1995        PMID: 7870583      PMCID: PMC306646          DOI: 10.1093/nar/23.1.170

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  32 in total

1.  The importance of gene rearrangement in evolution: evidence from studies on rates of chromosomal, protein, and anatomical evolution.

Authors:  A C Wilson; V M Sarich; L R Maxson
Journal:  Proc Natl Acad Sci U S A       Date:  1974-08       Impact factor: 11.205

2.  Identification and characterization of new human medium reiteration frequency repeats.

Authors:  J Jurka; D J Kaplan; C H Duncan; J Walichiewicz; A Milosavljevic; G Murali; J F Solus
Journal:  Nucleic Acids Res       Date:  1993-03-11       Impact factor: 16.971

3.  Body size, metabolic rate, generation time, and the molecular clock.

Authors:  A P Martin; S R Palumbi
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-01       Impact factor: 11.205

4.  MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation.

Authors:  A F Smit; A D Riggs
Journal:  Nucleic Acids Res       Date:  1995-01-11       Impact factor: 16.971

5.  Molecular resurrection of an extinct ancestral promoter for mouse L1.

Authors:  N B Adey; T O Tollefsbol; A B Sparks; M H Edgell; C A Hutchison
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

6.  Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification.

Authors:  E Zietkiewicz; A Rafalski; D Labuda
Journal:  Genomics       Date:  1994-03-15       Impact factor: 5.736

7.  Renaturation rate studies of a single family of interspersed repeated sequences in human deoxyribonucleic acid.

Authors:  F P Rinehart; T G Ritch; P L Deininger; C W Schmid
Journal:  Biochemistry       Date:  1981-05-26       Impact factor: 3.162

8.  Identification of a precursor genomic segment that provided a sequence unique to glycophorin B and E genes.

Authors:  M Onda; S Kudo; A Rearden; M G Mattei; M Fukuda
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

9.  Identification of a new, abundant superfamily of mammalian LTR-transposons.

Authors:  A F Smit
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

10.  Coordinated posttranscriptional control of gene expression by modular elements including Alu-like repetitive sequences.

Authors:  F Vidal; E Mougneau; N Glaichenhaus; P Vaigot; M Darmon; F Cuzin
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-01       Impact factor: 11.205

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  35 in total

1.  Extrathymic generation of regulatory T cells in placental mammals mitigates maternal-fetal conflict.

Authors:  Robert M Samstein; Steven Z Josefowicz; Aaron Arvey; Piper M Treuting; Alexander Y Rudensky
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

2.  Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals.

Authors:  Li Yu; Ya-Ping Zhang
Journal:  Mamm Genome       Date:  2005-10-14       Impact factor: 2.957

3.  macroH2A1 histone variants are depleted on active genes but concentrated on the inactive X chromosome.

Authors:  Lakshmi N Changolkar; John R Pehrson
Journal:  Mol Cell Biol       Date:  2006-06       Impact factor: 4.272

4.  Core-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution.

Authors:  Patrick J Kirby; Ian K Greaves; Edda Koina; Paul D Waters; Jennifer A Marshall Graves
Journal:  Chromosome Res       Date:  2008-01-09       Impact factor: 5.239

5.  Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome.

Authors:  John M Greally
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-26       Impact factor: 11.205

Review 6.  Reverse transcriptase: mediator of genomic plasticity.

Authors:  J Brosius; H Tiedge
Journal:  Virus Genes       Date:  1995       Impact factor: 2.332

7.  Characterization of species-specifically amplified SINEs in three salmonid species--chum salmon, pink salmon, and kokanee: the local environment of the genome may be important for the generation of a dominant source gene at a newly retroposed locus.

Authors:  N Takasaki; L Park; M Kaeriyama; A J Gharrett; N Okada
Journal:  J Mol Evol       Date:  1996-02       Impact factor: 2.395

8.  Artiodactyl interspersed DNA repeats in cetacean genomes.

Authors:  J B Buntjer; I A Hoff; J A Lenstra
Journal:  J Mol Evol       Date:  1997-07       Impact factor: 2.395

Review 9.  On viruses, sex, and motherhood.

Authors:  L P Villarreal; L P Villareal
Journal:  J Virol       Date:  1997-02       Impact factor: 5.103

10.  Molecular evolution of two lineages of L1 (LINE-1) retrotransposons in the california mouse, Peromyscus californicus.

Authors:  N C Casavant; R N Lee; A N Sherman; H A Wichman
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

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