Literature DB >> 8413604

Crystal structure of a yeast TBP/TATA-box complex.

Y Kim1, J H Geiger, S Hahn, P B Sigler.   

Abstract

The 2.5 A crystal structure of a TATA-box complex with yeast TBP shows that the eight base pairs of the TATA box bind to the concave surface of TBP by bending towards the major groove with unprecedented severity. This produces a wide open, underwound, shallow minor groove which forms a primarily hydrophobic interface with the entire under-surface of the TBP saddle. The severe bend and a positive writhe radically alter the trajectory of the flanking B-form DNA.

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Year:  1993        PMID: 8413604     DOI: 10.1038/365512a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  327 in total

1.  Predicting conformational switches in proteins.

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2.  Orientation of the transcription preinitiation complex in archaea.

Authors:  S D Bell; P L Kosa; P B Sigler; S P Jackson
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Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

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5.  The structure of a stable intermediate in the A <--> B DNA helix transition.

Authors:  H L Ng; M L Kopka; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

Review 6.  DNA wrapping in transcription initiation by RNA polymerase II.

Authors:  B Coulombe
Journal:  Biochem Cell Biol       Date:  1999       Impact factor: 3.626

Review 7.  Chemical approaches to control gene expression.

Authors:  J M Gottesfeld; J M Turner; P B Dervan
Journal:  Gene Expr       Date:  2000

8.  Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation.

Authors:  T D Schneider
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

9.  Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing.

Authors:  Nicola G A Abrescia; Andrew Thompson; Tam Huynh-Dinh; Juan A Subirana
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

10.  DNA exhibits multi-stranded binding recognition on glass microarrays.

Authors:  S J Shi; A Scheffer; E Bjeldanes; M A Reynolds; L J Arnold
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

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