Literature DB >> 11097426

Chemical approaches to control gene expression.

J M Gottesfeld1, J M Turner, P B Dervan.   

Abstract

A current goal in molecular medicine is the development of new strategies to interfere with gene expression in living cells in the hope that novel therapies for human disease will result from these efforts. This review focuses on small-molecule or chemical approaches to manipulate gene expression by modulating either transcription of messenger RNA-coding genes or protein translation. The molecules under study include natural products, designed ligands, and compounds identified through functional screens of combinatorial libraries. The cellular targets for these molecules include DNA, messenger RNA, and the protein components of the transcription, RNA processing, and translational machinery. Studies with model systems have shown promise in the inhibition of both cellular and viral gene transcription and mRNA utilization. Moreover, strategies for both repression and activation of gene transcription have been described. These studies offer promise for treatment of diseases of pathogenic (viral, bacterial, etc.) and cellular origin (cancer, genetic diseases, etc.).

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Year:  2000        PMID: 11097426      PMCID: PMC5964961          DOI: 10.3727/000000001783992696

Source DB:  PubMed          Journal:  Gene Expr        ISSN: 1052-2166


  78 in total

1.  Structure of a photoactive rhodium complex intercalated into DNA.

Authors:  C L Kielkopf; K E Erkkila; B P Hudson; J K Barton; D C Rees
Journal:  Nat Struct Biol       Date:  2000-02

Review 2.  Targeting the minor groove of DNA.

Authors:  D E Wemmer; P B Dervan
Journal:  Curr Opin Struct Biol       Date:  1997-06       Impact factor: 6.809

3.  Controlling gene expression in living cells through small molecule-RNA interactions.

Authors:  G Werstuck; M R Green
Journal:  Science       Date:  1998-10-09       Impact factor: 47.728

Review 4.  Small-molecule-based strategies for controlling gene expression.

Authors:  C Denison; T Kodadek
Journal:  Chem Biol       Date:  1998-06

5.  Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove.

Authors:  C L Kielkopf; R E Bremer; S White; J W Szewczyk; J M Turner; E E Baird; P B Dervan; D C Rees
Journal:  J Mol Biol       Date:  2000-01-21       Impact factor: 5.469

6.  A comparison of DNA-binding drugs as inhibitors of E2F1- and Sp1-DNA complexes and associated gene expression.

Authors:  S Y Chiang; J C Azizkhan; T A Beerman
Journal:  Biochemistry       Date:  1998-03-03       Impact factor: 3.162

7.  Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain.

Authors:  A R Ferré-D'Amaré; G C Prendergast; E B Ziff; S K Burley
Journal:  Nature       Date:  1993-05-06       Impact factor: 49.962

8.  Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production.

Authors:  M L Zapp; S Stern; M R Green
Journal:  Cell       Date:  1993-09-24       Impact factor: 41.582

9.  Adriamycin-induced DNA adducts inhibit the DNA interactions of transcription factors and RNA polymerase.

Authors:  S M Cutts; P G Parsons; R A Sturm; D R Phillips
Journal:  J Biol Chem       Date:  1996-03-08       Impact factor: 5.157

10.  Evidence that a minor groove-binding peptide and a major groove-binding protein can simultaneously occupy a common site on DNA.

Authors:  M G Oakley; M Mrksich; P B Dervan
Journal:  Biochemistry       Date:  1992-11-17       Impact factor: 3.162

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  20 in total

1.  Thermodynamic characterization of the multivalent binding of chartreusin to DNA.

Authors:  Francisca Barceló; Damiana Capó; José Portugal
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

2.  The antiviral activity of the combinations of netropsin derivatives with modified nucleosides and phosphonoacetic acid as estimated in the model of herpesvirus type 1 in a vero cell culture.

Authors:  V L Andronova; S L Grokhovsky; A N Surovaya; G V Gursky; G A Galegov
Journal:  Dokl Biochem Biophys       Date:  2005 Jan-Feb       Impact factor: 0.788

3.  Effect of dimeric derivatives of netropsin and their combinations with acyclovir on herpes simplex virus type 1 infection in mice.

Authors:  V L Andronova; S L Grokhovskii; A N Surovaya; G V Gurskii; G A Galegov
Journal:  Dokl Biochem Biophys       Date:  2007 Mar-Apr       Impact factor: 0.788

4.  Specificity landscapes of DNA binding molecules elucidate biological function.

Authors:  Clayton D Carlson; Christopher L Warren; Karl E Hauschild; Mary S Ozers; Naveeda Qadir; Devesh Bhimsaria; Youngsook Lee; Franco Cerrina; Aseem Z Ansari
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

5.  Promoter-specific inhibition of transcription by daunorubicin in Saccharomyces cerevisiae.

Authors:  Silvia Marín; Sylvia Mansilla; Natàlia García-Reyero; Marta Rojas; José Portugal; Benjamin Piña
Journal:  Biochem J       Date:  2002-11-15       Impact factor: 3.857

6.  Nuclear localization of pyrrole-imidazole polyamide-fluorescein conjugates in cell culture.

Authors:  Timothy P Best; Benjamin S Edelson; Nicholas G Nickols; Peter B Dervan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

Review 7.  Small molecules affecting transcription in Friedreich ataxia.

Authors:  Joel M Gottesfeld
Journal:  Pharmacol Ther       Date:  2007-08-09       Impact factor: 12.310

8.  A novel gene regulator, pyrrole-imidazole polyamide targeting ABCA1 gene increases cholesterol efflux from macrophages and plasma HDL concentration.

Authors:  Akiko Tsunemi; Takahiro Ueno; Noboru Fukuda; Takayoshi Watanabe; Kazunobu Tahira; Akira Haketa; Yoshinari Hatanaka; Sho Tanaka; Taro Matsumoto; Yoshiaki Matsumoto; Hiroki Nagase; Masayoshi Soma
Journal:  J Mol Med (Berl)       Date:  2014-01-25       Impact factor: 4.599

9.  DNA sequence recognition by an isopropyl substituted thiazole polyamide.

Authors:  Peter L James; Elena E Merkina; Abedawn I Khalaf; Colin J Suckling; Roger D Waigh; Tom Brown; Keith R Fox
Journal:  Nucleic Acids Res       Date:  2004-06-24       Impact factor: 16.971

10.  Sequence-specific protection of plasmid DNA from restriction endonuclease hydrolysis by pyrrole-imidazole-cyclopropapyrroloindole conjugates.

Authors:  Kazuhisa Fujimoto; Hirokazu Iida; Masako Kawakami; Toshikazu Bando; Zhi-Fu Tao; Hiroshi Sugiyama
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

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