Literature DB >> 10675317

Macromolecular mimicry.

P Nissen1, M Kjeldgaard, J Nyborg.   

Abstract

Some proteins have been shown to mimic the overall shape and structure of nucleic acids. For some of the proteins involved in translating the genetic information into proteins on the ribosome particle, there are indications that such observations of macromolecular mimicry even extend to similarity in interaction with and function on the ribosome. A small number of structural results obtained outside the protein biosynthesis machinery could indicate that the concept of macromolecular mimicry between proteins and nucleic acids is more general. The implications for the function and evolution of protein biosynthesis are discussed.

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Year:  2000        PMID: 10675317      PMCID: PMC305586          DOI: 10.1093/emboj/19.4.489

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  59 in total

Review 1.  Macromolecular mimicry of nucleic acid and protein.

Authors:  G N Pedersen; J Nyborg; B F Clark
Journal:  IUBMB Life       Date:  1999-07       Impact factor: 3.885

2.  Sequence-specific recognition of double helical nucleic acids by proteins.

Authors:  N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1976-03       Impact factor: 11.205

3.  Two structurally different RNA molecules are bound by the spliceosomal protein U1A using the same recognition strategy.

Authors:  L Jovine; C Oubridge; J M Avis; K Nagai
Journal:  Structure       Date:  1996-05-15       Impact factor: 5.006

Review 4.  RNA surfaces as functional mimetics of proteins.

Authors:  J D Keene
Journal:  Chem Biol       Date:  1996-07

Review 5.  Polypeptide chain release factors.

Authors:  R H Buckingham; G Grentzmann; L Kisselev
Journal:  Mol Microbiol       Date:  1997-05       Impact factor: 3.501

6.  Crystal structure of the EF-Tu.EF-Ts complex from Thermus thermophilus.

Authors:  Y Wang; Y Jiang; M Meyering-Voss; M Sprinzl; P B Sigler
Journal:  Nat Struct Biol       Date:  1997-08

7.  The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA.

Authors:  H Stark; F Mueller; E V Orlova; M Schatz; P Dube; T Erdemir; F Zemlin; R Brimacombe; M van Heel
Journal:  Structure       Date:  1995-08-15       Impact factor: 5.006

8.  Direct visualization of A-, P-, and E-site transfer RNAs in the Escherichia coli ribosome.

Authors:  R K Agrawal; P Penczek; R A Grassucci; Y Li; A Leith; K H Nierhaus; J Frank
Journal:  Science       Date:  1996-02-16       Impact factor: 47.728

9.  Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

Authors:  A AEvarsson; E Brazhnikov; M Garber; J Zheltonosova; Y Chirgadze; S al-Karadaghi; L A Svensson; A Liljas
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

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  14 in total

1.  The ribosomal binding and peptidyl-tRNA hydrolysis functions of Escherichia coli release factor 2 are linked through residue 246.

Authors:  D N Wilson; D Guévremont; W P Tate
Journal:  RNA       Date:  2000-12       Impact factor: 4.942

2.  Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.

Authors:  T Toyoda; O F Tin; K Ito; T Fujiwara; T Kumasaka; M Yamamoto; M B Garber; Y Nakamura
Journal:  RNA       Date:  2000-10       Impact factor: 4.942

3.  Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.

Authors:  Mikel Valle; Jayati Sengupta; Neil K Swami; Robert A Grassucci; Nils Burkhardt; Knud H Nierhaus; Rajendra K Agrawal; Joachim Frank
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

Review 4.  Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu.

Authors:  Xabier Agirrezabala; Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

5.  Substrate promiscuity of an aminoglycoside antibiotic resistance enzyme via target mimicry.

Authors:  Desiree H Fong; Albert M Berghuis
Journal:  EMBO J       Date:  2002-05-15       Impact factor: 11.598

6.  Molecular dynamics of ribosomal elongation factors G and Tu.

Authors:  Katarzyna Kulczycka; Maciej Długosz; Joanna Trylska
Journal:  Eur Biophys J       Date:  2010-12-09       Impact factor: 1.733

7.  HEXIM1 forms a transcriptionally abortive complex with glucocorticoid receptor without involving 7SK RNA and positive transcription elongation factor b.

Authors:  Noriaki Shimizu; Rika Ouchida; Noritada Yoshikawa; Tetsuya Hisada; Hajime Watanabe; Kensaku Okamoto; Masatoshi Kusuhara; Hiroshi Handa; Chikao Morimoto; Hirotoshi Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-07       Impact factor: 11.205

8.  The conserved GTPase HflX is a ribosome splitting factor that binds to the E-site of the bacterial ribosome.

Authors:  Mackenzie L Coatham; Harland E Brandon; Jeffrey J Fischer; Tobias Schümmer; Hans-Joachim Wieden
Journal:  Nucleic Acids Res       Date:  2016-01-04       Impact factor: 16.971

9.  Autoimmune epitopes in messenger RNA.

Authors:  Barbara D Lipes; Jack D Keene
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

10.  Structural insights into protein-only RNase P complexed with tRNA.

Authors:  Anthony Gobert; Franziska Pinker; Olivier Fuchsbauer; Bernard Gutmann; René Boutin; Pierre Roblin; Claude Sauter; Philippe Giegé
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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