Literature DB >> 8401213

Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T4 lysozyme Ser 117-->Phe.

D E Anderson1, J H Hurley, H Nicholson, W A Baase, B W Matthews.   

Abstract

The T4 lysozyme mutant Ser 117-->Phe was isolated fortuitously and found to be more thermostable than wild-type by 1.1-1.4 kcal/mol. In the wild-type structure, the side chain of Ser 117 is in a sterically restricted region near the protein surface and forms a short hydrogen bond with Asn 132. The crystal structure of the S117F mutant shows that the introduced Phe side chain rotates by about 150 degrees about the C alpha-C beta bond relative to wild type and is buried in the hydrophobic core of the protein. Burial of Phe 117 is accommodated by rearrangements of the surrounding side chains of Leu 121, Leu 133, and Phe 153 and by main-chain shifts, which result in a minimal increase in packing density. The benzyl rings of Phe 117 and Phe 153 form a near-optimal edge-face interaction in the mutant structure. This aromatic-aromatic interaction, as well as increased hydrophobic stabilization and elimination of a close contact in the wild-type protein, apparently compensate for the loss of a hydrogen bond and the possible cost of structural rearrangements in the mutant. The structure illustrates the ability of a protein to accommodate a surprisingly large structural change in a manner that actually increases thermal stability. The mutant has activity about 10% that of wild-type, supportive of the prior hypothesis (Grütter, M.G. & Matthews, B.W., 1982, J. Mol. Biol. 154, 525-535) that the peptidoglycan substrate of T4 lysozyme makes extended contacts with the C-terminal domain in the vicinity of Ser 117.

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Year:  1993        PMID: 8401213      PMCID: PMC2142442          DOI: 10.1002/pro.5560020811

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

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Authors:  B W Matthews
Journal:  Biochemistry       Date:  1987-11-03       Impact factor: 3.162

Review 2.  Areas, volumes, packing and protein structure.

Authors:  F M Richards
Journal:  Annu Rev Biophys Bioeng       Date:  1977

3.  Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO.

Authors:  T A Jones
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

4.  Purification of bacteriophage T4 lysozyme.

Authors:  A Tsugita; M Inouye
Journal:  J Biol Chem       Date:  1968-01-25       Impact factor: 5.157

5.  Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday.

Authors:  G Streisinger; Y Okada; J Emrich; J Newton; A Tsugita; E Terzaghi; M Inouye
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1966

Review 6.  Aromatic-aromatic interaction: a mechanism of protein structure stabilization.

Authors:  S K Burley; G A Petsko
Journal:  Science       Date:  1985-07-05       Impact factor: 47.728

7.  Amino acid substitutions far from the active site of bacteriophage T4 lysozyme reduce catalytic activity and suggest that the C-terminal lobe of the enzyme participates in substrate binding.

Authors:  M G Grütter; B W Matthews
Journal:  J Mol Biol       Date:  1982-01-25       Impact factor: 5.469

8.  Aromatic-aromatic interactions and protein stability. Investigation by double-mutant cycles.

Authors:  L Serrano; M Bycroft; A R Fersht
Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

9.  Disulfide bond engineered into T4 lysozyme: stabilization of the protein toward thermal inactivation.

Authors:  L J Perry; R Wetzel
Journal:  Science       Date:  1984-11-02       Impact factor: 47.728

10.  A mutant T4 lysozyme (Val 131----Ala) designed to increase thermostability by the reduction of strain within an alpha-helix.

Authors:  S Dao-Pin; W A Baase; B W Matthews
Journal:  Proteins       Date:  1990
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  24 in total

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2.  An additional aromatic interaction improves the thermostability and thermophilicity of a mesophilic family 11 xylanase: structural basis and molecular study.

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4.  An evolutionary route to xylanase process fitness.

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5.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

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6.  An atomistic view on human hemoglobin carbon monoxide migration processes.

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Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

Review 7.  Implications of aromatic-aromatic interactions: From protein structures to peptide models.

Authors:  Kamlesh Madhusudan Makwana; Radhakrishnan Mahalakshmi
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

8.  Correlation between codon usage and thermostability.

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Journal:  Extremophiles       Date:  2006-07-08       Impact factor: 2.395

9.  Probing weakly polar interactions in cytochrome c.

Authors:  D S Auld; G B Young; A J Saunders; D F Doyle; S F Betz; G J Pielak
Journal:  Protein Sci       Date:  1993-12       Impact factor: 6.725

10.  Replacements in a conserved leucine cluster in the hydrophobic heme pocket of cytochrome c.

Authors:  T P Lo; M E Murphy; J G Guillemette; M Smith; G D Brayer
Journal:  Protein Sci       Date:  1995-02       Impact factor: 6.725

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