Literature DB >> 11266617

Stabilization of hen egg white lysozyme by a cavity-filling mutation.

T Ohmura1, T Ueda, K Ootsuka, M Saito, T Imoto.   

Abstract

Stabilization of a protein using cavity-filling strategy has hardly been successful because of unfavorable van der Waals contacts. We succeeded in stabilizing lysozymes by cavity-filling mutations. The mutations were checked by a simple energy minimization in advance. It was shown clearly that the sum of free energy change caused by the hydrophobicity and the cavity size was correlated very well with protein stability. We also considered the aromatic-aromatic interaction. It is reconfirmed that the cavity-filling mutation in a hydrophobic core is a very useful method to stabilize a protein when the mutation candidate is selected carefully.

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Year:  2001        PMID: 11266617      PMCID: PMC2373952          DOI: 10.1110/ps.37401

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  28 in total

1.  Hydrophobic packing in T4 lysozyme probed by cavity-filling mutants.

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Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

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Journal:  J Mol Biol       Date:  1976-07-25       Impact factor: 5.469

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Journal:  Proteins       Date:  1988

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Authors:  K Yutani; K Ogasahara; T Tsujita; Y Sugino
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

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Journal:  Int J Pept Protein Res       Date:  1986-10

6.  Determination and analysis of urea and guanidine hydrochloride denaturation curves.

Authors:  C N Pace
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

Review 7.  Aromatic-aromatic interaction: a mechanism of protein structure stabilization.

Authors:  S K Burley; G A Petsko
Journal:  Science       Date:  1985-07-05       Impact factor: 47.728

8.  A convenient synthesis of glycolchitin, a substrate of lysozyme.

Authors:  H Yamada; T Imoto
Journal:  Carbohydr Res       Date:  1981-05-18       Impact factor: 2.104

9.  Analysis of the relationship between enzyme activity and its internal motion using nuclear magnetic resonance: 15N relaxation studies of wild-type and mutant lysozyme.

Authors:  S Mine; S Tate; T Ueda; M Kainosho; T Imoto
Journal:  J Mol Biol       Date:  1999-03-12       Impact factor: 5.469

10.  Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3.

Authors:  M Matsumura; W J Becktel; B W Matthews
Journal:  Nature       Date:  1988-08-04       Impact factor: 49.962

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  12 in total

1.  Cavities of alpha(1)-antitrypsin that play structural and functional roles.

Authors:  C Lee; J S Maeng; J P Kocher; B Lee; M H Yu
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

2.  Accommodation of a highly symmetric core within a symmetric protein superfold.

Authors:  Stephen R Brych; Jaewon Kim; Timothy M Logan; Michael Blaber
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

3.  Comparison of family 12 glycoside hydrolases and recruited substitutions important for thermal stability.

Authors:  Mats Sandgren; Peter J Gualfetti; Andrew Shaw; Laurie S Gross; Mae Saldajeno; Anthony G Day; T Alwyn Jones; Colin Mitchinson
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

4.  Mutagenic stabilization and/or disruption of a CD4-bound state reveals distinct conformations of the human immunodeficiency virus type 1 gp120 envelope glycoprotein.

Authors:  Shi-Hua Xiang; Peter D Kwong; Rishi Gupta; Carlo D Rizzuto; David J Casper; Richard Wyatt; Liping Wang; Wayne A Hendrickson; Michael L Doyle; Joseph Sodroski
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

5.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

Authors:  Andrei L Lomize; Mikhail Y Reibarkh; Irina D Pogozheva
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

6.  Energetics of aliphatic deletions in protein cores.

Authors:  Marta Bueno; Luis A Campos; Jorge Estrada; Javier Sancho
Journal:  Protein Sci       Date:  2006-08       Impact factor: 6.725

7.  Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility.

Authors:  Diana I Paredes; Kyle Watters; Derek J Pitman; Christopher Bystroff; Jonathan S Dordick
Journal:  BMC Struct Biol       Date:  2011-10-20

8.  Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model.

Authors:  Jiří Černý; Lada Biedermannová; Pavel Mikulecký; Jiří Zahradník; Tatsiana Charnavets; Peter Šebo; Bohdan Schneider
Journal:  Biomed Res Int       Date:  2015-04-28       Impact factor: 3.411

9.  Application of Rigidity Theory to the Thermostabilization of Lipase A from Bacillus subtilis.

Authors:  Prakash Chandra Rathi; Alexander Fulton; Karl-Erich Jaeger; Holger Gohlke
Journal:  PLoS Comput Biol       Date:  2016-03-22       Impact factor: 4.475

10.  Comparing Residue Clusters from Thermophilic and Mesophilic Enzymes Reveals Adaptive Mechanisms.

Authors:  Deanne W Sammond; Noah Kastelowitz; Michael E Himmel; Hang Yin; Michael F Crowley; Yannick J Bomble
Journal:  PLoS One       Date:  2016-01-07       Impact factor: 3.240

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