Literature DB >> 16830074

Correlation between codon usage and thermostability.

Marx Gomes Van der Linden1, Sávio Torres de Farias.   

Abstract

Variations of arginine codon usage between organisms may have important implications to thermostability. The preferential usage of AGR codons for arginine in thermophiles and hyperthermophiles implies positive error minimization, contributing to avoid mutations that could harm protein thermostability. This bias is not a mere consequence of increased G + C content, as it has been previously suggested, and may represent a new mechanism of adaptation to protein thermostability.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16830074     DOI: 10.1007/s00792-006-0533-0

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  11 in total

1.  Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability.

Authors:  M J Thompson; D Eisenberg
Journal:  J Mol Biol       Date:  1999-07-09       Impact factor: 5.469

2.  Do ultrastable proteins from hyperthermophiles have high or low conformational rigidity?

Authors:  R Jaenicke
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

3.  Preferred amino acids and thermostability.

Authors:  Sávio T Farias; Maria Christina M Bonato
Journal:  Genet Mol Res       Date:  2003-12-30

4.  Thermo-search: lifestyle and thermostability analysis.

Authors:  Savio T Farias; Marx G van der Linden; Thais G Rêgo; Demétrius A M Araújo; Maria Christina M Bonato
Journal:  In Silico Biol       Date:  2004

5.  Essential factors determining codon usage in ubiquitin genes.

Authors:  K Mita; S Ichimura; M Nenoi
Journal:  J Mol Evol       Date:  1991-09       Impact factor: 2.395

6.  Representation of amino acid sequences in terms of interaction energy in protein globules.

Authors:  I N Berezovsky; V G Tumanyan; N G Esipova
Journal:  FEBS Lett       Date:  1997-11-24       Impact factor: 4.124

7.  Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T4 lysozyme Ser 117-->Phe.

Authors:  D E Anderson; J H Hurley; H Nicholson; W A Baase; B W Matthews
Journal:  Protein Sci       Date:  1993-08       Impact factor: 6.725

8.  Stabilization of creatinase from Pseudomonas putida by random mutagenesis.

Authors:  J Schumann; G Böhm; G Schumacher; R Rudolph; R Jaenicke
Journal:  Protein Sci       Date:  1993-10       Impact factor: 6.725

9.  Protein thermostability above 100 degreesC: a key role for ionic interactions.

Authors:  C Vetriani; D L Maeder; N Tolliday; K S Yip; T J Stillman; K L Britton; D W Rice; H H Klump; F T Robb
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

10.  Correlation between codon usage, regional genomic nucleotide composition, and amino acid composition in the cytochrome P-450 gene superfamily.

Authors:  T D Porter
Journal:  Biochim Biophys Acta       Date:  1995-04-26
View more
  10 in total

1.  Tracing and exploring the evolutionary origin and systematic function of fish complement C9.

Authors:  Lisen Li; Yubang Shen; Xiaoyan Xu; Weining Yang; Jiale Li
Journal:  Mol Genet Genomics       Date:  2021-03-14       Impact factor: 3.291

2.  Analysis of codon usage patterns in open reading frame 4 of hepatitis E viruses.

Authors:  Zoya Shafat; Anwar Ahmed; Mohammad K Parvez; Shama Parveen
Journal:  Beni Suef Univ J Basic Appl Sci       Date:  2022-05-10

3.  Patterns and influencing factor of synonymous codon usage in porcine circovirus.

Authors:  Xin-sheng Liu; Yong-guang Zhang; Yu-zhen Fang; Yong-lu Wang
Journal:  Virol J       Date:  2012-03-15       Impact factor: 4.099

4.  ANCAC: amino acid, nucleotide, and codon analysis of COGs--a tool for sequence bias analysis in microbial orthologs.

Authors:  Arno Meiler; Claudia Klinger; Michael Kaufmann
Journal:  BMC Bioinformatics       Date:  2012-09-08       Impact factor: 3.169

5.  Comparative analysis to identify determinants of changing life style in Thermosynechococcus elongatus BP-1, a thermophilic cyanobacterium.

Authors:  Ratna Prabha; Dhananjaya P Singh; Shailendra K Gupta; Sávio Torres de Farias; Anil Rai
Journal:  Bioinformation       Date:  2013-03-19

6.  Genome-wide analysis of codon usage and influencing factors in chikungunya viruses.

Authors:  Azeem Mehmood Butt; Izza Nasrullah; Yigang Tong
Journal:  PLoS One       Date:  2014-03-04       Impact factor: 3.240

7.  Genome-Wide Analysis of Codon Usage Bias in Epichloë festucae.

Authors:  Xiuzhang Li; Hui Song; Yu Kuang; Shuihong Chen; Pei Tian; Chunjie Li; Zhibiao Nan
Journal:  Int J Mol Sci       Date:  2016-07-15       Impact factor: 5.923

8.  Proteins of generalist and specialist pathogens differ in their amino acid composition.

Authors:  Luz P Blanco; Bryan L Payne; Felix Feyertag; David Alvarez-Ponce
Journal:  Life Sci Alliance       Date:  2018-07-17

9.  Deciphering the rationale behind specific codon usage pattern in extremophiles.

Authors:  Mohd Faheem Khan; Sanjukta Patra
Journal:  Sci Rep       Date:  2018-10-19       Impact factor: 4.379

10.  Complete Chloroplast Genome Sequence of Fagus longipetiolata Seemen (Fagaceae): Genome Structure, Adaptive Evolution, and Phylogenetic Relationships.

Authors:  Daqu Liang; Haoyun Wang; Jun Zhang; Yuanxiang Zhao; Feng Wu
Journal:  Life (Basel)       Date:  2022-01-09
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.