Literature DB >> 8399223

Rate-equilibria relationships in intramolecular proton transfer in human carbonic anhydrase III.

D N Silverman1, C Tu, X Chen, S M Tanhauser, A J Kresge, P J Laipis.   

Abstract

Maximal turnover rates for the dehydration of HCO3- catalyzed by the zinc metalloenzyme carbonic anhydrase III are limited by a proton transfer to zinc-bound hydroxide in the active site. We have used site-directed mutagenesis to place a proton donor, histidine, at position 64 and used 18O exchange between CO2 and water measured by mass spectrometry to determine the rates of intramolecular proton transfer to the zinc-bound hydroxide. In a series of site-specific mutants, the values of pKa of the zinc-bound water ranged from approximately 5 to 9. The rate constants for proton transfer obeyed a Brønsted correlation and showed sharp curvature characteristic of facile proton transfers. Application of Marcus rate theory shows that this proton transfer has the small intrinsic energy barrier (near 1.5 kcal/mol) characteristic of rapid proton transfer between nitrogen and oxygen acids and bases, but has an observed overall energy barrier (near 10 kcal/mol), indicating the involvement of accompanying, energy requiring processes such as solvent reorganization or conformational change.

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Year:  1993        PMID: 8399223     DOI: 10.1021/bi00091a029

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  17 in total

Review 1.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

2.  Structure determination of murine mitochondrial carbonic anhydrase V at 2.45-A resolution: implications for catalytic proton transfer and inhibitor design.

Authors:  P A Boriack-Sjodin; R W Heck; P J Laipis; D N Silverman; D W Christianson
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

3.  Characterization of CamH from Methanosarcina thermophila, founding member of a subclass of the {gamma} class of carbonic anhydrases.

Authors:  Sabrina A Zimmerman; Jean-Francois Tomb; James G Ferry
Journal:  J Bacteriol       Date:  2009-12-18       Impact factor: 3.490

4.  Intrinsic proton-donating power of zinc-bound water in a carbonic anhydrase active site model estimated by NMR.

Authors:  Stepan B Lesnichin; Ilya G Shenderovich; Titin Muljati; David Silverman; Hans-Heinrich Limbach
Journal:  J Am Chem Soc       Date:  2011-07-01       Impact factor: 15.419

5.  Location of binding sites in small molecule rescue of human carbonic anhydrase II.

Authors:  Deepa Bhatt; S Zoë Fisher; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

6.  Studies of proton translocations in biological systems: simulating proton transport in carbonic anhydrase by EVB-based models.

Authors:  Sonja Braun-Sand; Marek Strajbl; Arieh Warshel
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

7.  Water networks in fast proton transfer during catalysis by human carbonic anhydrase II.

Authors:  Rose Mikulski; Dayne West; Katherine H Sippel; Balendu Sankara Avvaru; Mayank Aggarwal; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biochemistry       Date:  2012-12-18       Impact factor: 3.162

8.  Effect of active-site mutation at Asn67 on the proton transfer mechanism of human carbonic anhydrase II.

Authors:  C Mark Maupin; Jiayin Zheng; Chingkuang Tu; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

9.  Highly conserved histidine plays a dual catalytic role in protein splicing: a pKa shift mechanism.

Authors:  Zhenming Du; Philip T Shemella; Yangzhong Liu; Scott A McCallum; Brian Pereira; Saroj K Nayak; Georges Belfort; Marlene Belfort; Chunyu Wang
Journal:  J Am Chem Soc       Date:  2009-08-19       Impact factor: 15.419

10.  Role of hydrophilic residues in proton transfer during catalysis by human carbonic anhydrase II.

Authors:  Jiayin Zheng; Balendu Sankara Avvaru; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biochemistry       Date:  2008-10-23       Impact factor: 3.162

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