Literature DB >> 18942852

Role of hydrophilic residues in proton transfer during catalysis by human carbonic anhydrase II.

Jiayin Zheng1, Balendu Sankara Avvaru, Chingkuang Tu, Robert McKenna, David N Silverman.   

Abstract

Catalysis by the zinc metalloenzyme human carbonic anhydrase II (HCA II) is limited in maximal velocity by proton transfer between His64 and the zinc-bound solvent molecule. Asn62 extends into the active site cavity of HCA II adjacent to His64 and has been shown to be one of several hydrophilic residues participating in a hydrogen-bonded solvent network within the active site. We compared several site-specific mutants of HCA II with replacements at position 62 (Ala, Val, Leu, Thr, and Asp). The efficiency of catalysis in the hydration of CO 2 for the resulting mutants has been characterized by (18)O exchange, and the structures of the mutants have been determined by X-ray crystallography to 1.5-1.7 A resolution. Each of these mutants maintained the ordered water structure observed by X-ray crystallography in the active site cavity of wild-type HCA II; hence, this water structure was not a variable in comparing with wild type the activities of mutants at residue 62. Crystal structures of wild-type and N62T HCA II showed both an inward and outward orientation of the side chain of His64; however, other mutants in this study showed predominantly inward (N62A, N62V, N62L) or predominantly outward (N62D) orientations of His64. A significant role of Asn62 in HCA II is to permit two conformations of the side chain of His64, the inward and outward, that contributes to maximal efficiency of proton transfer between the active site and solution. The site-specific mutant N62D had a mainly outward orientation of His64, yet the difference in p K a between the proton donor His64 and zinc-bound hydroxide was near zero, as in wild-type HCA II. The rate of proton transfer in catalysis by N62D HCA II was 5% that of wild type, showing that His64 mainly in the outward orientation is associated with inefficient proton transfer compared with His64 in wild type which shows both inward and outward orientations. These results emphasize the roles of the residues of the hydrophilic side of the active site cavity in maintaining efficient catalysis by carbonic anhydrase.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18942852      PMCID: PMC2702124          DOI: 10.1021/bi801473w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

1.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

2.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

3.  A 13C nuclear-magnetic-resonance study of CO2-HCO3-exchange catalyzed by human carbonic anhydrase C at chemical equilibrium.

Authors:  I Simonsson; B H Jonsson; S Lindskog
Journal:  Eur J Biochem       Date:  1979-01-15

4.  Functional diversity, conservation, and convergence in the evolution of the alpha-, beta-, and gamma-carbonic anhydrase gene families.

Authors:  D Hewett-Emmett; R E Tashian
Journal:  Mol Phylogenet Evol       Date:  1996-02       Impact factor: 4.286

Review 5.  Structure and mechanism of carbonic anhydrase.

Authors:  S Lindskog
Journal:  Pharmacol Ther       Date:  1997       Impact factor: 12.310

6.  Role of histidine 64 in the catalytic mechanism of human carbonic anhydrase II studied with a site-specific mutant.

Authors:  C K Tu; D N Silverman; C Forsman; B H Jonsson; S Lindskog
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

7.  Conformational mobility of His-64 in the Thr-200----Ser mutant of human carbonic anhydrase II.

Authors:  J F Krebs; C A Fierke; R S Alexander; D W Christianson
Journal:  Biochemistry       Date:  1991-09-24       Impact factor: 3.162

8.  Rate-equilibria relationships in intramolecular proton transfer in human carbonic anhydrase III.

Authors:  D N Silverman; C Tu; X Chen; S M Tanhauser; A J Kresge; P J Laipis
Journal:  Biochemistry       Date:  1993-10-12       Impact factor: 3.162

9.  Structure of native and apo carbonic anhydrase II and structure of some of its anion-ligand complexes.

Authors:  K Håkansson; M Carlsson; L A Svensson; A Liljas
Journal:  J Mol Biol       Date:  1992-10-20       Impact factor: 5.469

10.  Carbon dioxide hydration activity of carbonic anhydrase in mixtures of water and deuterium oxide.

Authors:  K S Venkatasubban; D N Silverman
Journal:  Biochemistry       Date:  1980-10-28       Impact factor: 3.162

View more
  23 in total

1.  Kinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II.

Authors:  Zoë Fisher; Christopher D Boone; Shya Masri Biswas; Balasubramanian Venkatakrishnan; Mayank Aggarwal; Chingkuang Tu; Mavis Agbandje-McKenna; David Silverman; Robert McKenna
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

2.  Structure and catalysis by carbonic anhydrase II: role of active-site tryptophan 5.

Authors:  Rose Mikulski; John F Domsic; George Ling; Chingkuang Tu; Arthur H Robbins; David N Silverman; Robert McKenna
Journal:  Arch Biochem Biophys       Date:  2011-10-05       Impact factor: 4.013

3.  Structural and kinetic study of the extended active site for proton transfer in human carbonic anhydrase II.

Authors:  John F Domsic; Wilton Williams; Suzanne Z Fisher; Chingkuang Tu; Mavis Agbandje-McKenna; David N Silverman; Robert McKenna
Journal:  Biochemistry       Date:  2010-08-03       Impact factor: 3.162

4.  Kinetic and crystallographic studies of the role of tyrosine 7 in the active site of human carbonic anhydrase II.

Authors:  Rose Mikulski; Balendu Sankara Avvaru; Chingkuang Tu; Nicolette Case; Robert McKenna; David N Silverman
Journal:  Arch Biochem Biophys       Date:  2010-12-09       Impact factor: 4.013

Review 5.  Proton transport in carbonic anhydrase: Insights from molecular simulation.

Authors:  C Mark Maupin; Gregory A Voth
Journal:  Biochim Biophys Acta       Date:  2009-09-16

6.  Water networks in fast proton transfer during catalysis by human carbonic anhydrase II.

Authors:  Rose Mikulski; Dayne West; Katherine H Sippel; Balendu Sankara Avvaru; Mayank Aggarwal; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biochemistry       Date:  2012-12-18       Impact factor: 3.162

7.  Effect of active-site mutation at Asn67 on the proton transfer mechanism of human carbonic anhydrase II.

Authors:  C Mark Maupin; Jiayin Zheng; Chingkuang Tu; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

8.  Proton transfer in catalysis and the role of proton shuttles in carbonic anhydrase.

Authors:  Rose L Mikulski; David N Silverman
Journal:  Biochim Biophys Acta       Date:  2009-08-11

9.  Tracking solvent and protein movement during CO2 release in carbonic anhydrase II crystals.

Authors:  Chae Un Kim; HyoJin Song; Balendu Sankara Avvaru; Sol M Gruner; SangYoun Park; Robert McKenna
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-25       Impact factor: 11.205

10.  Role of Trp19 and Tyr200 in catalysis by the γ-class carbonic anhydrase from Methanosarcina thermophila.

Authors:  Sabrina Zimmerman; John F Domsic; Chingkuang Tu; Arthur H Robbins; Robert McKenna; David N Silverman; James G Ferry
Journal:  Arch Biochem Biophys       Date:  2012-10-27       Impact factor: 4.013

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.