Literature DB >> 21682342

Intrinsic proton-donating power of zinc-bound water in a carbonic anhydrase active site model estimated by NMR.

Stepan B Lesnichin1, Ilya G Shenderovich, Titin Muljati, David Silverman, Hans-Heinrich Limbach.   

Abstract

Using liquid-state NMR spectroscopy we have estimated the proton-donating ability of Zn-bound water in organometallic complexes designed as models for the active site of the metalloenzyme carbonic anhydrase (CA). This ability is important for the understanding of the enzyme reaction mechanism. The desired information was obtained by (1)H and (15)N NMR at 180 K of solutions of [Tp(Ph,Me)ZnOH] [1, Tp(Ph,Me) = tris(2-methyl-4-phenylpyrazolyl)hydroborate] in CD(2)Cl(2), in the absence and presence of the proton donors (C(6)F(5))(3)BOH(2) [aquatris(pentafluorophenyl)boron] and Col-H(+) (2,4,6-trimethylpyridine-H(+)). Col-H(+) forms a strong OHN hydrogen bond with 1, where the proton is located closer to nitrogen than to oxygen. (C(6)F(5))(3)BOH(2), which exhibits a pK(a) value of 1 in water, also forms a strong hydrogen bond with 1, where the proton is shifted slightly across the hydrogen-bond center toward the Zn-bound oxygen. Finally, a complex between Col and (C(6)F(5))(3)BOH(2) was identified, exhibiting a zwitterionic OHN hydrogen bond, where H is entirely shifted to nitrogen. The comparison with complexes of Col with carboxylic acids studied previously suggests that, surprisingly, the Zn-bound water exhibits in an aprotic environment a similar proton-donating ability as a carboxylic acid characterized in water by a pK(a) of 2.2 ± 0.6. This value is much smaller than the value of 9 found for [Zn(OH(2))(6)](2+) in water and those between 5 and 8 reported for different forms of CA. Implications for the biological function of CA are discussed.

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Year:  2011        PMID: 21682342      PMCID: PMC3298762          DOI: 10.1021/ja203478j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  36 in total

1.  Models for metal ion function in carbonic anhydrase.

Authors:  P Woolley
Journal:  Nature       Date:  1975-12-25       Impact factor: 49.962

2.  Geometrical features of hydrogen bonded complexes involving sterically hindered pyridines.

Authors:  Daria V Andreeva; Brenda Ip; Andrey A Gurinov; Peter M Tolstoy; Gleb S Denisov; Ilja G Shenderovich; Hans-Heinrich Limbach
Journal:  J Phys Chem A       Date:  2006-09-21       Impact factor: 2.781

3.  Solvent-mediated proton transfer in catalysis by carbonic anhydrase.

Authors:  David N Silverman; Robert McKenna
Journal:  Acc Chem Res       Date:  2007-06-06       Impact factor: 22.384

4.  Pyrazolylborate-zinc-nucleobase-complexes, 2:(1) preparations and structures of Tp(Cum,Me)Zn and Tp(Ph,Me)Zn complexes.

Authors:  Dirk Badura; Heinrich Vahrenkamp
Journal:  Inorg Chem       Date:  2002-11-18       Impact factor: 5.165

5.  Proton transfer from exogenous donors in catalysis by human carbonic anhydrase II.

Authors:  Ileana Elder; Chingkuang Tu; Li-June Ming; Robert McKenna; David N Silverman
Journal:  Arch Biochem Biophys       Date:  2005-05-01       Impact factor: 4.013

6.  Functional diversity, conservation, and convergence in the evolution of the alpha-, beta-, and gamma-carbonic anhydrase gene families.

Authors:  D Hewett-Emmett; R E Tashian
Journal:  Mol Phylogenet Evol       Date:  1996-02       Impact factor: 4.286

7.  Nuclear magnetic resonance and ab initio studies of small complexes formed between water and pyridine derivatives in solid and liquid phases.

Authors:  Shasad Sharif; Ilja G Shenderovich; Leticia Gonzalez; Gleb S Denisov; David N Silverman; Hans-Heinrich Limbach
Journal:  J Phys Chem A       Date:  2007-06-19       Impact factor: 2.781

8.  Role of histidine 64 in the catalytic mechanism of human carbonic anhydrase II studied with a site-specific mutant.

Authors:  C K Tu; D N Silverman; C Forsman; B H Jonsson; S Lindskog
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

9.  The catalytic mechanism of carbonic anhydrase.

Authors:  S Lindskog; J E Coleman
Journal:  Proc Natl Acad Sci U S A       Date:  1973-09       Impact factor: 11.205

10.  NMR studies of solvent-assisted proton transfer in a biologically relevant Schiff base: toward a distinction of geometric and equilibrium H-bond isotope effects.

Authors:  Shasad Sharif; Gleb S Denisov; Michael D Toney; Hans-Heinrich Limbach
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

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Authors:  Catharine Shipps; H Ray Kelly; Peter J Dahl; Sophia M Yi; Dennis Vu; David Boyer; Calina Glynn; Michael R Sawaya; David Eisenberg; Victor S Batista; Nikhil S Malvankar
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

2.  Kinetic study of catalytic CO2 hydration by metal-substituted biomimetic carbonic anhydrase model complexes.

Authors:  DongKook Park; Man Sig Lee
Journal:  R Soc Open Sci       Date:  2019-08-07       Impact factor: 2.963

3.  Pore-Bound Water at the Key Residue Histidine 37 in Influenza A M2.

Authors:  Kumar Tekwani Movellan; Rıza Dervişoğlu; Stefan Becker; Loren B Andreas
Journal:  Angew Chem Int Ed Engl       Date:  2021-10-06       Impact factor: 15.336

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