Literature DB >> 8298466

Structures of randomly generated mutants of T4 lysozyme show that protein stability can be enhanced by relaxation of strain and by improved hydrogen bonding via bound solvent.

P Pjura1, B W Matthews.   

Abstract

The structures of three mutants of bacteriophage T4 lysozyme selected using a screen designed to identify thermostable variants are described. Each of the mutants has a substitution involving threonine. Two of the variants, Thr 26-->Ser (T26S) and Thr 151-->Ser (T151S), have increased reversible melting temperatures with respect to the wild-type protein. The third, Ala 93-->Thr (A93T), has essentially the same stability as wild type. Thr 26 is in the wall of the active-site cleft. Its replacement with serine results in the rearrangement of nearby residues, most notably Tyr 18, suggesting that the increase in stability may result from the removal of strain. Thr 151 in the wild-type structure is far from the active site and appears to sterically prevent the access of solvent to a preformed binding site. In the mutant, the removal of the methyl group allows access to the solvent binding site and, in addition, the Ser 151 hydroxyl rotates to a new position so that it also contributes to solvent binding. Residue 93 is in a highly exposed site on the surface of the molecule, and presumably is equally solvent exposed in the unfolded protein. It is, therefore, not surprising that the substitution Ala 93-->Thr does not change stability. The mutant structures show how chemically similar mutations can have different effects on both the structure and stability of the protein, depending on the structural context. The results also illustrate the power of random mutagenesis in obtaining variants with a desired phenotype.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1993        PMID: 8298466      PMCID: PMC2142314          DOI: 10.1002/pro.5560021222

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  12 in total

1.  Development of an in vivo method to identify mutants of phage T4 lysozyme of enhanced thermostability.

Authors:  P Pjura; M Matsumura; W A Baase; B W Matthews
Journal:  Protein Sci       Date:  1993-12       Impact factor: 6.725

2.  Genetic and structural analysis of the protein stability problem.

Authors:  B W Matthews
Journal:  Biochemistry       Date:  1987-11-03       Impact factor: 3.162

3.  Temperature-sensitive mutations of bacteriophage T4 lysozyme occur at sites with low mobility and low solvent accessibility in the folded protein.

Authors:  T Alber; D P Sun; J A Nye; D C Muchmore; B W Matthews
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

4.  Control of enzyme activity by an engineered disulfide bond.

Authors:  M Matsumura; B W Matthews
Journal:  Science       Date:  1989-02-10       Impact factor: 47.728

5.  Structural basis of amino acid alpha helix propensity.

Authors:  M Blaber; X J Zhang; B W Matthews
Journal:  Science       Date:  1993-06-11       Impact factor: 47.728

6.  Stabilization of phage T4 lysozyme by engineered disulfide bonds.

Authors:  M Matsumura; W J Becktel; M Levitt; B W Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

7.  Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59.

Authors:  J A Bell; W J Becktel; U Sauer; W A Baase; B W Matthews
Journal:  Biochemistry       Date:  1992-04-14       Impact factor: 3.162

8.  Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme.

Authors:  S Daopin; T Alber; W A Baase; J A Wozniak; B W Matthews
Journal:  J Mol Biol       Date:  1991-09-20       Impact factor: 5.469

9.  Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding.

Authors:  B W Matthews; H Nicholson; W J Becktel
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

10.  Analysis of the interaction between charged side chains and the alpha-helix dipole using designed thermostable mutants of phage T4 lysozyme.

Authors:  H Nicholson; D E Anderson; S Dao-pin; B W Matthews
Journal:  Biochemistry       Date:  1991-10-15       Impact factor: 3.162

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  7 in total

1.  Alteration of T4 lysozyme structure by second-site reversion of deleterious mutations.

Authors:  A R Poteete; D Rennell; S E Bouvier; L W Hardy
Journal:  Protein Sci       Date:  1997-11       Impact factor: 6.725

2.  Substitution of aspartic acid with glutamic acid at position 67 of the BRCA1 RING domain retains ubiquitin ligase activity and zinc(II) binding with a reduced transition temperature.

Authors:  Apichart Atipairin; Bhutorn Canyuk; Adisorn Ratanaphan
Journal:  J Biol Inorg Chem       Date:  2010-10-22       Impact factor: 3.358

3.  Design and structural analysis of an engineered thermostable chicken lysozyme.

Authors:  P Shih; J F Kirsch
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

4.  Thermostability of in vitro evolved Bacillus subtilis lipase A: a network and dynamics perspective.

Authors:  Ashutosh Srivastava; Somdatta Sinha
Journal:  PLoS One       Date:  2014-08-14       Impact factor: 3.240

Review 5.  Molecular and chemical engineering of bacteriophages for potential medical applications.

Authors:  Katarzyna Hodyra; Krystyna Dąbrowska
Journal:  Arch Immunol Ther Exp (Warsz)       Date:  2014-07-22       Impact factor: 4.291

6.  3D deep convolutional neural networks for amino acid environment similarity analysis.

Authors:  Wen Torng; Russ B Altman
Journal:  BMC Bioinformatics       Date:  2017-06-14       Impact factor: 3.169

7.  Complex network analysis of thermostable mutants of Bacillus subtilis Lipase A.

Authors:  Nitika Kandhari; Somdatta Sinha
Journal:  Appl Netw Sci       Date:  2017-06-26
  7 in total

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