Literature DB >> 9385644

Alteration of T4 lysozyme structure by second-site reversion of deleterious mutations.

A R Poteete1, D Rennell, S E Bouvier, L W Hardy.   

Abstract

Mutations that suppress the defects introduced into T4 lysozyme by single amino acid substitutions were isolated and characterized. Among 53 primary sites surveyed, 8 yielded second-site revertants; a total of 18 different mutants were obtained. Most of the restorative mutations exerted global effects, generally increasing lysozyme function in a number of primary mutant contexts. Six of them were more specific, suppressing only certain specific deleterious primary substitutions, or diminishing the function of lysozymes bearing otherwise nondeleterious primary substitutions. Some variants of proteins bearing primary substitutions at the positions of Asp 20 and Ala 98 are inferred to have significantly altered structures.

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Year:  1997        PMID: 9385644      PMCID: PMC2143591          DOI: 10.1002/pro.5560061115

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  30 in total

1.  Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution.

Authors:  L H Weaver; B W Matthews
Journal:  J Mol Biol       Date:  1987-01-05       Impact factor: 5.469

Review 2.  Turns in peptides and proteins.

Authors:  G D Rose; L M Gierasch; J A Smith
Journal:  Adv Protein Chem       Date:  1985

3.  Sequence determinants of promoter activity.

Authors:  P Youderian; S Bouvier; M M Susskind
Journal:  Cell       Date:  1982-10       Impact factor: 41.582

4.  Crystallographic determination of the mode of binding of oligosaccharides to T4 bacteriophage lysozyme: implications for the mechanism of catalysis.

Authors:  W F Anderson; M G Grütter; S J Remington; L H Weaver; B W Matthews
Journal:  J Mol Biol       Date:  1981-04-25       Impact factor: 5.469

5.  Relation between hen egg white lysozyme and bacteriophage T4 lysozyme: evolutionary implications.

Authors:  B W Matthews; S J Remington; M G Grütter; W F Anderson
Journal:  J Mol Biol       Date:  1981-04-25       Impact factor: 5.469

6.  Thermodynamic and structural compensation in "size-switch" core repacking variants of bacteriophage T4 lysozyme.

Authors:  E Baldwin; J Xu; O Hajiseyedjavadi; W A Baase; B W Matthews
Journal:  J Mol Biol       Date:  1996-06-14       Impact factor: 5.469

7.  Genetic analysis of staphylococcal nuclease: identification of three intragenic "global" suppressors of nuclease-minus mutations.

Authors:  D Shortle; B Lin
Journal:  Genetics       Date:  1985-08       Impact factor: 4.562

8.  Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme.

Authors:  S Daopin; T Alber; W A Baase; J A Wozniak; B W Matthews
Journal:  J Mol Biol       Date:  1991-09-20       Impact factor: 5.469

9.  Cumulative site-directed charge-change replacements in bacteriophage T4 lysozyme suggest that long-range electrostatic interactions contribute little to protein stability.

Authors:  S Dao-pin; E Söderlind; W A Baase; J A Wozniak; U Sauer; B W Matthews
Journal:  J Mol Biol       Date:  1991-10-05       Impact factor: 5.469

10.  Second-site revertants of an inactive T4 lysozyme mutant restore activity by restructuring the active site cleft.

Authors:  A R Poteete; D P Sun; H Nicholson; B W Matthews
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

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  15 in total

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Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

2.  Thermodynamic prediction of protein neutrality.

Authors:  Jesse D Bloom; Jonathan J Silberg; Claus O Wilke; D Allan Drummond; Christoph Adami; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-11       Impact factor: 11.205

3.  Compensatory evolution of a WW domain variant lacking the strictly conserved Trp residue.

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Journal:  J Mol Evol       Date:  2007-12-18       Impact factor: 2.395

4.  Systematic study of the genetic response of a variable virus to the introduction of deleterious mutations in a functional capsid region.

Authors:  Eva Luna; Alicia Rodríguez-Huete; Verónica Rincón; Roberto Mateo; Mauricio G Mateu
Journal:  J Virol       Date:  2009-07-22       Impact factor: 5.103

5.  Permissive secondary mutations enable the evolution of influenza oseltamivir resistance.

Authors:  Jesse D Bloom; Lizhi Ian Gong; David Baltimore
Journal:  Science       Date:  2010-06-04       Impact factor: 47.728

6.  Rescue of deleterious mutations by the compensatory Y30F mutation in ketosteroid isomerase.

Authors:  Hyung Jin Cha; Do Soo Jang; Yeon-Gil Kim; Bee Hak Hong; Jae-Sung Woo; Kyong-Tai Kim; Kwan Yong Choi
Journal:  Mol Cells       Date:  2013-06-03       Impact factor: 5.034

7.  Deterministic, compensatory mutational events in the capsid of foot-and-mouth disease virus in response to the introduction of mutations found in viruses from persistent infections.

Authors:  Roberto Mateo; Mauricio G Mateu
Journal:  J Virol       Date:  2006-12-06       Impact factor: 5.103

8.  Delineation of an evolutionary salvage pathway by compensatory mutations of a defective lysozyme.

Authors:  M Jucovic; A R Poteete
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

9.  Prevalence of epistasis in the evolution of influenza A surface proteins.

Authors:  Sergey Kryazhimskiy; Jonathan Dushoff; Georgii A Bazykin; Joshua B Plotkin
Journal:  PLoS Genet       Date:  2011-02-17       Impact factor: 5.917

10.  A computational-experimental approach identifies mutations that enhance surface expression of an oseltamivir-resistant influenza neuraminidase.

Authors:  Jesse D Bloom; Jagannath S Nayak; David Baltimore
Journal:  PLoS One       Date:  2011-07-20       Impact factor: 3.240

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