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Literature DB >> 17827307

6-Aminohexanoate oligomer hydrolases from the alkalophilic bacteria Agromyces sp. strain KY5R and Kocuria sp. strain KY2.

Kengo Yasuhira¹, Yasuhito Tanaka, Hiroshi Shibata, Yasuyuki Kawashima, Akira Ohara, Dai-ichiro Kato, Masahiro Takeo, Seiji Negoro.

Abstract

Alkalophilic, nylon oligomer-degrading strains, Agromyces sp. and Kocuria sp., were isolated from the wastewater of a nylon-6 factory and from activated sludge from a sewage disposal plant. The 6-aminohexanoate oligomer hydrolases (NylC) from the alkalophilic strains had 95.8 to 98.6% similarity to the enzyme in neutrophilic Arthrobacter sp. but had superior thermostability, activity under alkaline conditions, and affinity for nylon-related substrates, which would be advantageous for biotechnological applications.

Entities: Chemical Species

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Year: 2007 PMID： 17827307 PMCID： PMC2074972 DOI： 10.1128/AEM.00777-07

Source DB: PubMed Journal: Appl Environ Microbiol ISSN： 0099-2240 Impact factor: 4.792

17 in total

1. A new variant of the Ntn hydrolase fold revealed by the crystal structure of L-aminopeptidase D-ala-esterase/amidase from Ochrobactrum anthropi.

Authors: C Bompard-Gilles; V Villeret; G J Davies; L Fanuel; B Joris; J M Frère; J Van Beeumen
Journal: Structure Date: 2000-02-15 Impact factor: 5.006

2. Autocatalytic cleavage of the EMR2 receptor occurs at a conserved G protein-coupled receptor proteolytic site motif.

Authors: Hsi-Hsien Lin; Gin-Wen Chang; John Q Davies; Martin Stacey; James Harris; Siamon Gordon
Journal: J Biol Chem Date: 2004-05-18 Impact factor: 5.157

3. 6-Aminohexanoic acid cyclic dimer hydrolase. A new cyclic amide hydrolase produced by Achromobacter guttatus KI74.

Authors: S Kinoshita; S Negoro; M Muramatsu; V S Bisaria; S Sawada; H Okada
Journal: Eur J Biochem Date: 1977-11-01

4. High-copy-number and low-copy-number plasmid vectors for lacZ alpha-complementation and chloramphenicol- or kanamycin-resistance selection.

Authors: S Takeshita; M Sato; M Toba; W Masahashi; T Hashimoto-Gotoh
Journal: Gene Date: 1987 Impact factor: 3.688

5. Nylon oligomer degradation gene, nylC, on plasmid pOAD2 from a Flavobacterium strain encodes endo-type 6-aminohexanoate oligomer hydrolase: purification and characterization of the nylC gene product.

Authors: S Kakudo; S Negoro; I Urabe; H Okada
Journal: Appl Environ Microbiol Date: 1993-11 Impact factor: 4.792

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Authors: H Okada; S Negoro; H Kimura; S Nakamura
Journal: Nature Date: 1983 Nov 10-16 Impact factor: 49.962

7. Plasmid control of 6-aminohexanoic acid cyclic dimer degradation enzymes of Flavobacterium sp. KI72.

Authors: S Negoro; H Shinagawa; A Nakata; S Kinoshita; T Hatozaki; H Okada
Journal: J Bacteriol Date: 1980-07 Impact factor: 3.490

8. Purification and characterization of 6-aminohexanoic-acid-oligomer hydrolase of Flavobacterium sp. Ki72.

Authors: S Kinoshita; T Terada; T Taniguchi; Y Takene; S Masuda; N Matsunaga; H Okada
Journal: Eur J Biochem Date: 1981-06-01

9. A new nylon oligomer degradation gene (nylC) on plasmid pOAD2 from a Flavobacterium sp.

Authors: S Negoro; S Kakudo; I Urabe; H Okada
Journal: J Bacteriol Date: 1992-12 Impact factor: 3.490

10. Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase.

Authors: Seiji Negoro; Taku Ohki; Naoki Shibata; Kazuhiro Sasa; Haruhisa Hayashi; Hidehiko Nakano; Kengo Yasuhira; Dai-ichiro Kato; Masahiro Takeo; Yoshiki Higuchi
Journal: J Mol Biol Date: 2007-04-24 Impact factor: 5.469

9 in total

1. Three-dimensional structure of nylon hydrolase and mechanism of nylon-6 hydrolysis.

Authors: Seiji Negoro; Naoki Shibata; Yusuke Tanaka; Kengo Yasuhira; Hiroshi Shibata; Haruka Hashimoto; Young-Ho Lee; Shohei Oshima; Ryuji Santa; Shohei Oshima; Kozo Mochiji; Yuji Goto; Takahisa Ikegami; Keisuke Nagai; Dai-Ichiro Kato; Masahiro Takeo; Yoshiki Higuchi
Journal: J Biol Chem Date: 2011-12-19 Impact factor: 5.157

2. Crystallization and X-ray diffraction analysis of nylon-oligomer hydrolase (NylC) from Agromyces sp. KY5R.

Authors: Kengo Yasuhira; Naoki Shibata; Yasuhito Tanaka; Naoya Kumagai; Yusuke Tanaka; Keisuke Nagai; Dai-ichiro Kato; Masahiro Takeo; Seiji Negoro; Yoshiki Higuchi
Journal: Acta Crystallogr Sect F Struct Biol Cryst Commun Date: 2011-07-19

3. X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation.

Authors: Kengo Yasuhira; Naoki Shibata; Go Mongami; Yuki Uedo; Yu Atsumi; Yasuyuki Kawashima; Atsushi Hibino; Yusuke Tanaka; Young-Ho Lee; Dai-ichiro Kato; Masahiro Takeo; Yoshiki Higuchi; Seiji Negoro
Journal: J Biol Chem Date: 2009-11-03 Impact factor: 5.157

9. Isolation and genomic analysis of 11-aminoundecanoic acid-degrading bacterium Pseudomonas sp. JG-B from nylon 11 enrichment culture.

Authors: Jocelyn Gatz-Schrupp; Peter Deckard; Benjamin Hufford; Steven Ly; Peter Tupa; Hisako Masuda
Journal: J Genomics Date: 2020-01-25