Literature DB >> 8234335

Coding coenzyme handles: a hypothesis for the origin of the genetic code.

E Szathmáry1.   

Abstract

The coding coenzyme handle hypothesis suggests that useful coding preceded translation. Early adapters, the ancestors of present-day anticodons, were charged with amino acids acting as coenzymes of ribozymes in a metabolically complex RNA world. The ancestral aminoacyl-adapter synthetases could have been similar to present-day self-splicing tRNA introns. A codon-anticodon-discriminator base complex embedded in these synthetases could have played an important role in amino acid recognition. Extension of the genetic code proceeded through the take-over of nonsense codons by novel amino acids, related to already coded ones either through precursor-product relationship or physicochemical similarity. The hypothesis is open for experimental tests.

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Year:  1993        PMID: 8234335      PMCID: PMC47683          DOI: 10.1073/pnas.90.21.9916

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  61 in total

1.  The maintenance of the accuracy of protein synthesis and its relevance to ageing.

Authors:  L E ORGEL
Journal:  Proc Natl Acad Sci U S A       Date:  1963-04       Impact factor: 11.205

2.  Metabolic complexity in the RNA world and implications for the origin of protein synthesis.

Authors:  T J Gibson; A I Lamond
Journal:  J Mol Evol       Date:  1990-01       Impact factor: 2.395

Review 3.  Evolution of the genetic code as affected by anticodon content.

Authors:  S Osawa; T H Jukes
Journal:  Trends Genet       Date:  1988-07       Impact factor: 11.639

Review 4.  The origin of polynucleotide-directed protein synthesis.

Authors:  L E Orgel
Journal:  J Mol Evol       Date:  1989-12       Impact factor: 2.395

5.  The extension reached by the minimization of the polarity distances during the evolution of the genetic code.

Authors:  M Di Giulio
Journal:  J Mol Evol       Date:  1989-10       Impact factor: 2.395

6.  How old is the genetic code? Statistical geometry of tRNA provides an answer.

Authors:  M Eigen; B F Lindemann; M Tietze; R Winkler-Oswatitsch; A Dress; A von Haeseler
Journal:  Science       Date:  1989-05-12       Impact factor: 47.728

7.  Codon reassignment (codon capture) in evolution.

Authors:  S Osawa; T H Jukes
Journal:  J Mol Evol       Date:  1989-04       Impact factor: 2.395

8.  Genetic code development by stop codon takeover.

Authors:  N Lehman; T H Jukes
Journal:  J Theor Biol       Date:  1988-11-21       Impact factor: 2.691

9.  Modern metabolism as a palimpsest of the RNA world.

Authors:  S A Benner; A D Ellington; A Tauer
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

10.  The phylogeny of tRNA sequences provides evidence for ambiguity reduction in the origin of the genetic code.

Authors:  W M Fitch; K Upper
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987
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  46 in total

1.  An in vitro evolved precursor tRNA with aminoacylation activity.

Authors:  H Saito; D Kourouklis; H Suga
Journal:  EMBO J       Date:  2001-04-02       Impact factor: 11.598

2.  Guilt by association: the arginine case revisited.

Authors:  R D Knight; L F Landweber
Journal:  RNA       Date:  2000-04       Impact factor: 4.942

Review 3.  The early phases of genetic code origin: conjectures on the evolution of coded catalysis.

Authors:  Massimo Di Giulio
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

4.  Hypothesis: emergence of translation as a result of RNA helicase evolution.

Authors:  Nikolay Zenkin
Journal:  J Mol Evol       Date:  2012-04-28       Impact factor: 2.395

5.  Stable tRNA-based phylogenies using only 76 nucleotides.

Authors:  Jeremy Widmann; J Kirk Harris; Catherine Lozupone; Alexey Wolfson; Rob Knight
Journal:  RNA       Date:  2010-06-17       Impact factor: 4.942

6.  Amino acid homochirality may be linked to the origin of phosphate-based life.

Authors:  Da Xiong Han; Hai Yan Wang; Zhi Liang Ji; An Fu Hu; Yu Fen Zhao
Journal:  J Mol Evol       Date:  2010-05-27       Impact factor: 2.395

7.  The origin of the genetic code and protein synthesis.

Authors:  S Alberti
Journal:  J Mol Evol       Date:  1997-10       Impact factor: 2.395

8.  The minimotif synthesis hypothesis for the origin of life.

Authors:  Martin R Schiller
Journal:  J Transl Sci       Date:  2016-07-19

9.  Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code.

Authors:  J Gregory Caporaso; Michael Yarus; Rob Knight
Journal:  J Mol Evol       Date:  2005-10-06       Impact factor: 2.395

10.  A new classification scheme of the genetic code.

Authors:  Thomas Wilhelm; Svetlana Nikolajewa
Journal:  J Mol Evol       Date:  2004-11       Impact factor: 2.395

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