Literature DB >> 20506019

Amino acid homochirality may be linked to the origin of phosphate-based life.

Da Xiong Han1, Hai Yan Wang, Zhi Liang Ji, An Fu Hu, Yu Fen Zhao.   

Abstract

Phosphorylation has to have been one of the key events in prebiotic evolution on earth. In this article, the emergence of phosphoryl amino acid 5'-nucleosides having a P-N bond is described as a model of the origin of amino acid homochirality and Genetic Code. It is proposed that the intramolecular interaction between the nucleotide base and the amino acid side-chain influences the stability of particular amino acid 5'-nucleotides, and the interaction also selects for the chirality of amino acids. The differences between L: - and D: -conformation energies (DeltaE (conf)) are evaluated by DFT methods at the B3LYP/6-31G(d) level. Although, as expected, these DeltaE (conf) values are not large, they do give differences in energy that can distinguish the chirality of amino acids. Based on our calculations, the chiral selection of the earliest amino acids for L: -enantiomers seems to be determined by a clear stereochemical/physicochemical relationship. As later amino acids developed from the earliest amino acids, we deduce that the chirality of these late amino acids was inherited from that of the early amino acids. This idea reaches far back into evolution, and we hope that it will guide further experiments in this area.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20506019     DOI: 10.1007/s00239-010-9353-z

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  30 in total

1.  Physicochemical optimization in the genetic code origin as the number of codified amino acids increases.

Authors:  M Di Giulio; M Medugno
Journal:  J Mol Evol       Date:  1999-07       Impact factor: 2.395

2.  A new plasmid display technology for the in vitro selection of functional phenotype-genotype linked proteins.

Authors:  R E Speight; D J Hart; J D Sutherland; J M Blackburn
Journal:  Chem Biol       Date:  2001-10

3.  Consensus temporal order of amino acids and evolution of the triplet code.

Authors:  E N Trifonov
Journal:  Gene       Date:  2000-12-30       Impact factor: 3.688

4.  Amino acids as RNA ligands: a direct-RNA-template theory for the code's origin.

Authors:  M Yarus
Journal:  J Mol Evol       Date:  1998-07       Impact factor: 2.395

5.  On the origin of the genetic code.

Authors:  M Di Giulio
Journal:  J Theor Biol       Date:  1997-08-21       Impact factor: 2.691

6.  The origin of life and its methodological challenge.

Authors:  G Wächtershäuser
Journal:  J Theor Biol       Date:  1997-08-21       Impact factor: 2.691

7.  Entropy and charge in molecular evolution--the case of phosphate.

Authors:  G Arrhenius; B Sales; S Mojzsis; T Lee
Journal:  J Theor Biol       Date:  1997-08-21       Impact factor: 2.691

8.  Simultaneous formation of peptides and nucleotides from N-phosphothreonine.

Authors:  W Zhou; Y Ju; Y Zhao; Q Wang; G Luo
Journal:  Orig Life Evol Biosph       Date:  1996-12       Impact factor: 1.950

9.  RNA-directed amino acid homochirality.

Authors:  J Martyn Bailey
Journal:  FASEB J       Date:  1998-04       Impact factor: 5.191

Review 10.  Chemical interactions between amino acid and RNA: multiplicity of the levels of specificity explains origin of the genetic code.

Authors:  Hervé Seligmann; G Nissim Amzallag
Journal:  Naturwissenschaften       Date:  2002-11-07
View more
  6 in total

1.  Theory of the origin, evolution, and nature of life.

Authors:  Erik D Andrulis
Journal:  Life (Basel)       Date:  2011-12-23

2.  More Pieces of Ancient than Recent Theoretical Minimal Proto-tRNA-Like RNA Rings in Genes Coding for tRNA Synthetases.

Authors:  Jacques Demongeot; Hervé Seligmann
Journal:  J Mol Evol       Date:  2019-04-05       Impact factor: 2.395

3.  Pentamers with Non-redundant Frames: Bias for Natural Circular Code Codons.

Authors:  Jacques Demongeot; Hervé Seligmann
Journal:  J Mol Evol       Date:  2020-01-07       Impact factor: 2.395

4.  Life's Order, Complexity, Organization, and Its Thermodynamic-Holistic Imperatives.

Authors:  Richard Egel
Journal:  Life (Basel)       Date:  2012-11-13

Review 5.  The Alanine World Model for the Development of the Amino Acid Repertoire in Protein Biosynthesis.

Authors:  Vladimir Kubyshkin; Nediljko Budisa
Journal:  Int J Mol Sci       Date:  2019-11-05       Impact factor: 5.923

6.  Protein Sequences Recapitulate Genetic Code Evolution.

Authors:  Hervé Seligmann
Journal:  Comput Struct Biotechnol J       Date:  2018-05-30       Impact factor: 7.271

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.