Literature DB >> 11285242

An in vitro evolved precursor tRNA with aminoacylation activity.

H Saito1, D Kourouklis, H Suga.   

Abstract

A set of catalysts for aminoacyl-tRNA synthesis is an essential component for translation. The RNA world hypothesis postulates that RNA catalysts could have played this role. Here we show an in vitro evolved precursor tRNA consisting of two domains, a catalytic 5'-leader sequence and an aminoacyl-acceptor tRNA. The 5'-leader sequence domain selectively self-charges phenylalanine on the 3'-terminus of the tRNA domain. This cis-acting ribozyme is susceptible to RNase P RNA, generating the corresponding 5'-leader segment and the mature tRNA. Moreover, the 5'-leader segment is able to aminoacylate the mature tRNA in trans. Mutational studies have revealed that C(74) and C(75) at the tRNA aminoacyl-acceptor end form base pairs with G71 and G70 of the trans-acting ribozyme. Such Watson-Crick base pairing with tRNA has been observed in RNase P RNA and 23S rRNA, suggesting that all three ribozymes use a similar mechanism for the recognition of the aminoacyl-acceptor end. Our demonstrations indicate that catalytic precursor tRNAs could have provided the foundations for the genetic coding system in the proto-translation system.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11285242      PMCID: PMC145511          DOI: 10.1093/emboj/20.7.1797

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  50 in total

1.  Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA.

Authors:  S Busch; L A Kirsebom; H Notbohm; R K Hartmann
Journal:  J Mol Biol       Date:  2000-06-16       Impact factor: 5.469

2.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  Unusual resistance of peptidyl transferase to protein extraction procedures.

Authors:  H F Noller; V Hoffarth; L Zimniak
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

4.  Selection of viral RNA-derived tRNA-like structures with improved valylation activities.

Authors:  J Wientges; J Pütz; R Giegé; C Florentz; A Schwienhorst
Journal:  Biochemistry       Date:  2000-05-23       Impact factor: 3.162

5.  Genetic code origins: tRNAs older than their synthetases?

Authors:  L Ribas de Pouplana; R J Turner; B A Steer; P Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

6.  Engineering a tRNA and aminoacyl-tRNA synthetase for the site-specific incorporation of unnatural amino acids into proteins in vivo.

Authors:  D R Liu; T J Magliery; M Pastrnak; P G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-16       Impact factor: 11.205

7.  A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome.

Authors:  R R Samaha; R Green; H F Noller
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

8.  The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.

Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

9.  A novel ribozyme with ester transferase activity.

Authors:  A Jenne; M Famulok
Journal:  Chem Biol       Date:  1998-01

10.  Structural and kinetic characterization of an acyl transferase ribozyme.

Authors:  H Suga; P A Lohse; J W Szostak
Journal:  J Am Chem Soc       Date:  1998-02-18       Impact factor: 15.419

View more
  33 in total

1.  Concurrent molecular recognition of the amino acid and tRNA by a ribozyme.

Authors:  H Saito; K Watanabe; H Suga
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

2.  Minihelix-loop RNAs: minimal structures for aminoacylation catalysts.

Authors:  Krishna Ramaswamy; Kenneth Wei; Hiroaki Suga
Journal:  Nucleic Acids Res       Date:  2002-05-15       Impact factor: 16.971

3.  Flexizymes for genetic code reprogramming.

Authors:  Yuki Goto; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Protoc       Date:  2011-05-12       Impact factor: 13.491

4.  Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme.

Authors:  Hirohide Saito; Hiroaki Suga
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

5.  The RNA origin of transfer RNA aminoacylation and beyond.

Authors:  Hiroaki Suga; Gosuke Hayashi; Naohiro Terasaka
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

6.  Inhibited cell growth and protein functional changes from an editing-defective tRNA synthetase.

Authors:  Jamie M Bacher; Valérie de Crécy-Lagard; Paul R Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-12       Impact factor: 11.205

7.  Efficiency of a self-aminoacylating ribozyme: effect of the length and base-composition of its 3' extension.

Authors:  Jean Lehmann; Amy Reichel; Axel Buguin; Albert Libchaber
Journal:  RNA       Date:  2007-06-07       Impact factor: 4.942

8.  Toward ribosomal RNA catalytic activity in the absence of protein.

Authors:  Rachel M Anderson; Miyun Kwon; Scott A Strobel
Journal:  J Mol Evol       Date:  2007-04-05       Impact factor: 2.395

Review 9.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

10.  Rapid and simple ribozymic aminoacylation using three conserved nucleotides.

Authors:  N V Chumachenko; Y Novikov; M Yarus
Journal:  J Am Chem Soc       Date:  2009-04-15       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.