Literature DB >> 8233786

HAPPY mapping of a YAC reveals alternative haplotypes in the human immunoglobulin VH locus.

G Walter1, I M Tomlinson, G P Cook, G Winter, T H Rabbitts, P H Dear.   

Abstract

We have identified and sequenced 14 human immunoglobulin VH segments cloned in a yeast artificial chromosome, and have used a rapid PCR-based technique (HAPPY mapping, 12) to derive the order and approximate distances between them. The sequences mapped comprise thirteen germline VH segments and one rearranged VH3 gene. Comparison of our map with other data suggests the existence of at least two distinct haplotypes, differing in the presence or absence of the consecutive genes DP-78, DP-46 and DP-64, and in the duplication of segments DP-49 and DP-65. Screening of ten individuals confirms the existence of both haplotypes, and indicates that both are common amongst the population.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8233786      PMCID: PMC311185          DOI: 10.1093/nar/21.19.4524

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  A 3.5 genome equivalent multi access YAC library: construction, characterisation, screening and storage.

Authors:  R Anand; J H Riley; R Butler; J C Smith; A F Markham
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

2.  Organization and evolution of variable region genes of the human immunoglobulin heavy chain.

Authors:  M Kodaira; T Kinashi; I Umemura; F Matsuda; T Noma; Y Ono; T Honjo
Journal:  J Mol Biol       Date:  1986-08-20       Impact factor: 5.469

3.  A novel family of variable region genes of the human immunoglobulin heavy chain.

Authors:  K H Lee; F Matsuda; T Kinashi; M Kodaira; T Honjo
Journal:  J Mol Biol       Date:  1987-06-20       Impact factor: 5.469

4.  A VH gene is located within 95 Kb of the human immunoglobulin heavy chain constant region genes.

Authors:  L Buluwela; T H Rabbitts
Journal:  Eur J Immunol       Date:  1988-11       Impact factor: 5.532

5.  Early restriction of the human antibody repertoire.

Authors:  H W Schroeder; J L Hillson; R M Perlmutter
Journal:  Science       Date:  1987-11-06       Impact factor: 47.728

6.  CpG dinucleotides are "hotspots" for mutation in the antithrombin III gene. Twelve variants identified using the polymerase chain reaction.

Authors:  D J Perry; R W Carrell
Journal:  Mol Biol Med       Date:  1989-06

7.  The physical organization of the human immunoglobulin heavy chain gene complex.

Authors:  M A Walter; U Surti; M H Hofker; D W Cox
Journal:  EMBO J       Date:  1990-10       Impact factor: 11.598

8.  Transcription enhancer identified near the human C mu immunoglobulin heavy chain gene is unavailable to the translocated c-myc gene in a Burkitt lymphoma.

Authors:  T H Rabbitts; A Forster; R Baer; P H Hamlyn
Journal:  Nature       Date:  1983 Dec 22-1984 Jan 4       Impact factor: 49.962

9.  Immunoglobulin heavy chain genes in humans are located on chromosome.

Authors:  M J Hobart; T H Rabbitts; P N Goodfellow; E Solomon; S Chambers; N Spurr; S Povey
Journal:  Ann Hum Genet       Date:  1981-10       Impact factor: 1.670

10.  A new human immunoglobulin VH family preferentially rearranged in immature B-cell tumours.

Authors:  C G Humphries; A Shen; W A Kuziel; J D Capra; F R Blattner; P W Tucker
Journal:  Nature       Date:  1988-02-04       Impact factor: 49.962

View more
  15 in total

1.  A high-resolution HAPPY map of Dictyostelium discoideum chromosome 6.

Authors:  B A Konfortov; H M Cohen; A T Bankier; P H Dear
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

2.  Direct detection of insertion/deletion polymorphisms in an autosomal region by analyzing high-density markers in individual spermatozoa.

Authors:  Sreemanta Pramanik; Honghua Li
Journal:  Am J Hum Genet       Date:  2002-11-19       Impact factor: 11.025

3.  Identification of two new alleles, IGHV3-23*04 and IGHJ6*04, and the complete sequence of the IGHV3-h pseudogene in the human immunoglobulin locus and their prevalences in Danish Caucasians.

Authors:  Line Ohm-Laursen; Stine Rosenkilde Larsen; Torben Barington
Journal:  Immunogenetics       Date:  2005-10-18       Impact factor: 2.846

4.  Analysis of human VH gene repertoire expression in peripheral CD19+ B cells.

Authors:  C Demaison; D David; F Letourneur; J Thèze; S Saragosti; M Zouali
Journal:  Immunogenetics       Date:  1995       Impact factor: 2.846

5.  Determination of gene organization in individual haplotypes by analyzing single DNA fragments from single spermatozoa.

Authors:  X Cui; H Li
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

6.  The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements.

Authors:  Marie J Kidd; Zhiliang Chen; Yan Wang; Katherine J Jackson; Lyndon Zhang; Scott D Boyd; Andrew Z Fire; Mark M Tanaka; Bruno A Gaëta; Andrew M Collins
Journal:  J Immunol       Date:  2011-12-28       Impact factor: 5.422

7.  Expression of the immunoglobulin VH gene 51p1 is proportional to its germline gene copy number.

Authors:  E H Sasso; T Johnson; T J Kipps
Journal:  J Clin Invest       Date:  1996-05-01       Impact factor: 14.808

8.  Ethnic differences of polymorphism of an immunoglobulin VH3 gene.

Authors:  E H Sasso; J H Buckner; L A Suzuki
Journal:  J Clin Invest       Date:  1995-09       Impact factor: 14.808

9.  Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation.

Authors:  Corey T Watson; Karyn M Steinberg; John Huddleston; Rene L Warren; Maika Malig; Jacqueline Schein; A Jeremy Willsey; Jeffrey B Joy; Jamie K Scott; Tina A Graves; Richard K Wilson; Robert A Holt; Evan E Eichler; Felix Breden
Journal:  Am J Hum Genet       Date:  2013-03-28       Impact factor: 11.025

10.  Population and family studies of three disease-related polymorphic genes in systemic lupus erythematosus.

Authors:  D F Huang; K A Siminovitch; X Y Liu; T Olee; N J Olsen; C Berry; D A Carson; P P Chen
Journal:  J Clin Invest       Date:  1995-04       Impact factor: 14.808

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.