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Literature DB >> 8177730

Nucleosomal DNA sequence database.

I Ioshikhes¹, E N Trifonov.

Abstract

Mesh：

Substances：
Nucleosomes
DNA

Year: 1993 PMID： 8177730 PMCID： PMC311396 DOI： 10.1093/nar/21.21.4857

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

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19 in total

1. In vitro assembly of a positioned nucleosome near the hypersensitive region in simian virus 40 chromatin.

Authors: J H Powers; M Bina
Journal: J Mol Biol Date: 1991-10-05 Impact factor: 5.469

2. Poly(dA).poly(dT) rich sequences are not sufficient to exclude nucleosome formation in a constitutive yeast promoter.

Authors: R Losa; S Omari; F Thoma
Journal: Nucleic Acids Res Date: 1990-06-25 Impact factor: 16.971

3. Formation, stability and core histone positioning of nucleosomes reassembled on bent and other nucleosome-derived DNA.

Authors: S Pennings; S Muyldermans; G Meersseman; L Wyns
Journal: J Mol Biol Date: 1989-05-05 Impact factor: 5.469

4. The yeast GAL1-10 UAS region readily accepts nucleosomes in vitro.

Authors: M Rainbow; J Lopez; D Lohr
Journal: Biochemistry Date: 1989-09-05 Impact factor: 3.162

5. Non-random arrangement of nucleosomes in satellite I containing chromatin of rat liver.

Authors: T Igo-Kemenes; A Omori; H G Zachau
Journal: Nucleic Acids Res Date: 1980-11-25 Impact factor: 16.971

6. Structural features of a phased nucleosome core particle.

Authors: R T Simpson; D W Stafford
Journal: Proc Natl Acad Sci U S A Date: 1983-01 Impact factor: 11.205

7. Alternative DNA-protein interactions in variable-length internucleosomal regions associated with Drosophila Adh distal promoter expression.

Authors: A Ewel; J R Jackson; C Benyajati
Journal: Nucleic Acids Res Date: 1990-04-11 Impact factor: 16.971

8. Location of nucleosomes in simian virus 40 chromatin.

Authors: C Ambrose; H Lowman; A Rajadhyaksha; V Blasquez; M Bina
Journal: J Mol Biol Date: 1990-08-20 Impact factor: 5.469

9. In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics.

Authors: E Käs; U K Laemmli
Journal: EMBO J Date: 1992-02 Impact factor: 11.598

10. A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro.

Authors: C Schild; F X Claret; W Wahli; A P Wolffe
Journal: EMBO J Date: 1993-02 Impact factor: 11.598

13 in total

Nucleosomal DNA sequence database.

1. In vitro assembly of a positioned nucleosome near the hypersensitive region in simian virus 40 chromatin.

2. Poly(dA).poly(dT) rich sequences are not sufficient to exclude nucleosome formation in a constitutive yeast promoter.

3. Formation, stability and core histone positioning of nucleosomes reassembled on bent and other nucleosome-derived DNA.

4. The yeast GAL1-10 UAS region readily accepts nucleosomes in vitro.

5. Non-random arrangement of nucleosomes in satellite I containing chromatin of rat liver.

6. Structural features of a phased nucleosome core particle.

7. Alternative DNA-protein interactions in variable-length internucleosomal regions associated with Drosophila Adh distal promoter expression.

8. Location of nucleosomes in simian virus 40 chromatin.

9. In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics.

10. A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro.

1. RECON: a program for prediction of nucleosome formation potential.

Review 2. Applications of alignment-free methods in epigenomics.

3. Enhancement of the nucleosomal pattern in sequences of lower complexity.

4. Unique translational positioning of nucleosomes on synthetic DNAs.

5. The EMBL Nucleotide Sequence Database.

Review 6. Transcription factor access to chromatin.

7. Modulation of differential transcription of tRNA genes through chromatin organization.

8. The European Bioinformatics Institute (EBI) databases.

9. Multi-alphabet consensus algorithm for identification of low specificity protein-DNA interactions.

10. Transcriptional activation of a moderately expressed tRNA gene by a positioned nucleosome.