Literature DB >> 2194162

Poly(dA).poly(dT) rich sequences are not sufficient to exclude nucleosome formation in a constitutive yeast promoter.

R Losa1, S Omari, F Thoma.   

Abstract

It was suggested that poly(dA).poly(dT) rich sequences in yeast Saccharomyces cerevisiae act as elements of constitutive promoters by exclusion of nucleosomes (Struhl, K. (1985). Proc. Natl. Acad. Sci. USA 82, 8419-8423). We have mapped the chromatin structure of the pet56-his3-ded1 region in minichromosomes and show that the poly(dA).poly(dT) sequences are located in nuclease sensitive regions. DNA fragments from the nuclease sensitive promoter region of DED1 were used for nucleosome reconstitution in vitro. We show that all sequences can form nucleosome cores and that the poly(dA).poly(dT) sequence can be incorporated in nucleosome cores. The results suggest that the nuclease sensitivity found in vivo is not established by poly(dA).poly(dT) mediated exclusion of nucleosomes.

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Year:  1990        PMID: 2194162      PMCID: PMC331002          DOI: 10.1093/nar/18.12.3495

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  28 in total

1.  Chromatin folding modulates nucleosome positioning in yeast minichromosomes.

Authors:  F Thoma; M Zatchej
Journal:  Cell       Date:  1988-12-23       Impact factor: 41.582

2.  Artificial nucleosome positioning sequences.

Authors:  T E Shrader; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

3.  Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix.

Authors:  L C Lutter
Journal:  J Mol Biol       Date:  1978-09-15       Impact factor: 5.469

4.  Stability of the higher-order structure of chicken-erythrocyte chromatin in solution.

Authors:  D L Bates; P J Butler; E C Pearson; J O Thomas
Journal:  Eur J Biochem       Date:  1981-10

5.  Structural features of a phased nucleosome core particle.

Authors:  R T Simpson; D W Stafford
Journal:  Proc Natl Acad Sci U S A       Date:  1983-01       Impact factor: 11.205

6.  Cromatin and core particles formed from the inner histones and synthetic polydeoxyribonucleotides of defined sequence.

Authors:  R T Simpson; P Künzler
Journal:  Nucleic Acids Res       Date:  1979-04       Impact factor: 16.971

7.  Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.

Authors:  G R Kunkel; H G Martinson
Journal:  Nucleic Acids Res       Date:  1981-12-21       Impact factor: 16.971

8.  Sequence of a yeast DNA fragment containing a chromosomal replicator and the TRP1 gene.

Authors:  G Tschumper; J Carbon
Journal:  Gene       Date:  1980-07       Impact factor: 3.688

9.  Activation of yeast RNA polymerase II transcription by a thymidine-rich upstream element in vitro.

Authors:  N F Lue; A R Buchman; R D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

10.  Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin.

Authors:  F Thoma; T Koller; A Klug
Journal:  J Cell Biol       Date:  1979-11       Impact factor: 10.539

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  31 in total

1.  DNA repair in a yeast origin of replication: contributions of photolyase and nucleotide excision repair.

Authors:  B Suter; R E Wellinger; F Thoma
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

2.  Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo.

Authors:  B Suter; G Schnappauf; F Thoma
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

3.  SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin.

Authors:  Yeonjung Kim; David J Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

Review 4.  Evolutionary consequences of nonrandom damage and repair of chromatin domains.

Authors:  T Boulikas
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

5.  Wrapping of genomic polydA.polydT tracts around nucleosome core particles.

Authors:  K R Fox
Journal:  Nucleic Acids Res       Date:  1992-03-25       Impact factor: 16.971

6.  Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent mobilization of nucleosomes over the entire gene.

Authors:  Yeonjung Kim; Neil McLaughlin; Kim Lindstrom; Toshio Tsukiyama; David J Clark
Journal:  Mol Cell Biol       Date:  2006-09-18       Impact factor: 4.272

7.  DNA triple-helix formation on nucleosome-bound poly(dA).poly(dT) tracts.

Authors:  P M Brown; K R Fox
Journal:  Biochem J       Date:  1998-07-15       Impact factor: 3.857

8.  Chromatin structure of the Saccharomyces cerevisiae DNA topoisomerase I promoter in different growth phases.

Authors:  L Rubbi; G Camilloni; M Caserta; E Di Mauro; S Venditti
Journal:  Biochem J       Date:  1997-12-01       Impact factor: 3.857

9.  Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene.

Authors:  R E Wellinger; F Thoma
Journal:  EMBO J       Date:  1997-08-15       Impact factor: 11.598

10.  Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene.

Authors:  R F Lascaris; E Groot; P B Hoen; W H Mager; R J Planta
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

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