Literature DB >> 9336172

Liquid crystalline ordering of nucleosome core particles under macromolecular crowding conditions: evidence for a discotic columnar hexagonal phase.

A Leforestier1, F Livolant.   

Abstract

Macromolecular crowding conditions occurring inside the cell nucleus were reproduced experimentally with solutions of mononucleosome core particles to study their supramolecular organization. We report here that under these conditions, and over a large range of monovalent salt concentrations, mononucleosome core particles self-assemble to form a discotic liquid crystalline phase characterized in polarizing and freeze-fracture electron microscopy. Mononucleosomes are stacked on each other to form columns, which are themselves closely packed into an hexagonal array. The nucleosome concentration, estimated from the network parameters, falls in the range of values measured in cell nuclei. We suggest that these concentrated solutions, although their organization cannot be immediately compared to the organization of chromatin in vivo, may be used to investigate the nucleosome-nucleosome interactions. Furthermore, this approach may be complexified to take into account the complexity of the eucaryotic chromatin.

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Year:  1997        PMID: 9336172      PMCID: PMC1181077          DOI: 10.1016/S0006-3495(97)78207-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  25 in total

Review 1.  Toward a unified model of chromatin folding.

Authors:  J Widom
Journal:  Annu Rev Biophys Biophys Chem       Date:  1989

2.  The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix.

Authors:  G Arents; R W Burlingame; B C Wang; W E Love; E N Moudrianakis
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-15       Impact factor: 11.205

3.  Crystals of a nucleosome core particle containing defined sequence DNA.

Authors:  T J Richmond; M A Searles; R T Simpson
Journal:  J Mol Biol       Date:  1988-01-05       Impact factor: 5.469

4.  The highly concentrated liquid-crystalline phase of DNA is columnar hexagonal.

Authors:  F Livolant; A M Levelut; J Doucet; J P Benoit
Journal:  Nature       Date:  1989-06-29       Impact factor: 49.962

5.  Concentration evaluation of chromatin in unstained resin-embedded sections by means of low-dose ratio-contrast imaging in STEM.

Authors:  B Bohrmann; M Haider; E Kellenberger
Journal:  Ultramicroscopy       Date:  1993-02       Impact factor: 2.689

6.  A chromatin folding model that incorporates linker variability generates fibers resembling the native structures.

Authors:  C L Woodcock; S A Grigoryev; R A Horowitz; N Whitaker
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

Review 7.  Histone H1 and the regulation of transcription of eukaryotic genes.

Authors:  J Zlatanova
Journal:  Trends Biochem Sci       Date:  1990-07       Impact factor: 13.807

8.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.

Authors:  S Cayley; B A Lewis; H J Guttman; M T Record
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

9.  Cryo-electron microscopy of vitrified chromosomes in situ.

Authors:  A W McDowall; J M Smith; J Dubochet
Journal:  EMBO J       Date:  1986-06       Impact factor: 11.598

10.  The diameters of frozen-hydrated chromatin fibers increase with DNA linker length: evidence in support of variable diameter models for chromatin.

Authors:  B D Athey; M F Smith; D A Rankert; S P Williams; J P Langmore
Journal:  J Cell Biol       Date:  1990-09       Impact factor: 10.539

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  25 in total

1.  Chiral discotic columnar germs of nucleosome core particles.

Authors:  F Livolant; A Leforestier
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

2.  Aggregation of nucleosomes by divalent cations.

Authors:  M de Frutos; E Raspaud; A Leforestier; F Livolant
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

3.  Bilayers of nucleosome core particles.

Authors:  A Leforestier; J Dubochet; F Livolant
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

4.  Computer simulation of the 30-nanometer chromatin fiber.

Authors:  Gero Wedemann; Jörg Langowski
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

5.  X-ray diffraction characterization of the dense phases formed by nucleosome core particles.

Authors:  Stéphanie Mangenot; Amélie Leforestier; Dominique Durand; Françoise Livolant
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

6.  Topological constraints on the possible structures of the 30 nm chromatin fibre.

Authors:  D Z Staynov; Y G Proykova
Journal:  Chromosoma       Date:  2007-10-13       Impact factor: 4.316

Review 7.  Structure, dynamics, and evolution of centromeric nucleosomes.

Authors:  Yamini Dalal; Takehito Furuyama; Danielle Vermaak; Steven Henikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-24       Impact factor: 11.205

8.  Salt-induced conformation and interaction changes of nucleosome core particles.

Authors:  Stéphanie Mangenot; Amélie Leforestier; Patrice Vachette; Dominique Durand; Françoise Livolant
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

9.  Sticking and stacking: Persistent ordering of fragmented DNA analogs.

Authors:  Rudolf Podgornik
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-09       Impact factor: 11.205

10.  Compaction of Single-Molecule Megabase-Long Chromatin under the Influence of Macromolecular Crowding.

Authors:  Anatoly Zinchenko; Nikolay V Berezhnoy; Qinming Chen; Lars Nordenskiöld
Journal:  Biophys J       Date:  2018-05-03       Impact factor: 4.033

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