Literature DB >> 8063693

Crystal structure, at 2.6-A resolution, of the Streptomyces lividans xylanase A, a member of the F family of beta-1,4-D-glycanases.

U Derewenda1, L Swenson, R Green, Y Wei, R Morosoli, F Shareck, D Kluepfel, Z S Derewenda.   

Abstract

The crystal structure of the 32-kDa catalytic domain of the Streptomyces lividans xylanase A was solved by molecular isomorphous replacement methods and subsequently refined at 2.6-A resolution to a conventional crystallographic R factor of 0.21. This is the first successful structure determination of a member of the F family of endo-beta-1,4-D-glycanases. Unlike the recently determined xylanases of the G family (Wakarchuk, W. W., Campbell, R. L., Sung, W. L., Davoodi, J., and Yaguchi, M. (1994) Protein Sci. 3, 467-475), where the catalytic domains have a unique beta-sheet structure, the 32-kDa domain of the S. lividans xylanase A is folded into a complete (alpha/beta)8 barrel, the first such fold observed among beta-1,4-D-glycanases. The active site is located at the carbonyl end of the beta barrel. The crystal structure supports the earlier assignment of Glu-128 and Glu-236 as the catalytic amino acids (Moreau, A., Roberge, M., Manin, C., Shareck, F., Kluepfel, D., and Morosoli, R. (1994) Biochem. J., in press).

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Year:  1994        PMID: 8063693

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

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Authors:  Gennady Zolotnitsky; Uri Cogan; Noam Adir; Vered Solomon; Gil Shoham; Yuval Shoham
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-26       Impact factor: 11.205

2.  Enzymatic deconstruction of xylan for biofuel production.

Authors:  Dylan Dodd; Isaac K O Cann
Journal:  Glob Change Biol Bioenergy       Date:  2009-02-18       Impact factor: 4.745

3.  Increase in xylanase production by Streptomyces lividans through simultaneous use of the Sec- and Tat-dependent protein export systems.

Authors:  Céline Gauthier; Haiming Li; Rolf Morosoli
Journal:  Appl Environ Microbiol       Date:  2005-06       Impact factor: 4.792

4.  Sequence of xynC and properties of XynC, a major component of the Clostridium thermocellum cellulosome.

Authors:  H Hayashi; K I Takagi; M Fukumura; T Kimura; S Karita; K Sakka; K Ohmiya
Journal:  J Bacteriol       Date:  1997-07       Impact factor: 3.490

5.  Crystallization and preliminary X-ray crystallographic studies of XynX, a family 10 xylanase from Aeromonas punctata ME-1.

Authors:  Zui Fujimoto; Kengo Usui; Yukari Kondo; Kazumasa Yasui; Keiichi Kawai; Tohru Suzuki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-02-01

6.  Substrate-binding domains of glycanases from Streptomyces lividans: characterization of a new family of xylan-binding domains.

Authors:  C Dupont; M Roberge; F Shareck; R Morosoli; D Kluepfel
Journal:  Biochem J       Date:  1998-02-15       Impact factor: 3.857

7.  Structural comparisons of TIM barrel proteins suggest functional and evolutionary relationships between beta-galactosidase and other glycohydrolases.

Authors:  D H Juers; R E Huber; B W Matthews
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

8.  Isolation and expression of the xynB gene and its product, XynB, a consistent component of the Clostridium cellulovorans cellulosome.

Authors:  Sung Ok Han; Hideaki Yukawa; Masayuki Inui; Roy H Doi
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

9.  Thermostable xylanase10B from Clostridium acetobutylicum ATCC824.

Authors:  Mursheda K Ali; Frederick B Rudolph; George N Bennett
Journal:  J Ind Microbiol Biotechnol       Date:  2004-06-08       Impact factor: 3.346

10.  Structure of the xylanase from Penicillium simplicissimum.

Authors:  A Schmidt; A Schlacher; W Steiner; H Schwab; C Kratky
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

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