Literature DB >> 20431716

Enzymatic deconstruction of xylan for biofuel production.

Dylan Dodd1, Isaac K O Cann.   

Abstract

The combustion of fossil-derived fuels has a significant impact on atmospheric carbon dioxide (CO(2)) levels and correspondingly is an important contributor to anthropogenic global climate change. Plants have evolved photosynthetic mechanisms in which solar energy is used to fix CO(2) into carbohydrates. Thus, combustion of biofuels, derived from plant biomass, can be considered a potentially carbon neutral process. One of the major limitations for efficient conversion of plant biomass to biofuels is the recalcitrant nature of the plant cell wall, which is composed mostly of lignocellulosic materials (lignin, cellulose, and hemicellulose). The heteropolymer xylan represents the most abundant hemicellulosic polysaccharide and is composed primarily of xylose, arabinose, and glucuronic acid. Microbes have evolved a plethora of enzymatic strategies for hydrolyzing xylan into its constituent sugars for subsequent fermentation to biofuels. Therefore, microorganisms are considered an important source of biocatalysts in the emerging biofuel industry. To produce an optimized enzymatic cocktail for xylan deconstruction, it will be valuable to gain insight at the molecular level of the chemical linkages and the mechanisms by which these enzymes recognize their substrates and catalyze their reactions. Recent advances in genomics, proteomics, and structural biology have revolutionized our understanding of the microbial xylanolytic enzymes. This review focuses on current understanding of the molecular basis for substrate specificity and catalysis by enzymes involved in xylan deconstruction.

Entities:  

Year:  2009        PMID: 20431716      PMCID: PMC2860967          DOI: 10.1111/j.1757-1707.2009.01004.x

Source DB:  PubMed          Journal:  Glob Change Biol Bioenergy        ISSN: 1757-1693            Impact factor:   4.745


  71 in total

1.  Comparative modeling of the three-dimensional structures of family 3 glycoside hydrolases.

Authors:  A J Harvey; M Hrmova; R De Gori; J N Varghese; G B Fincher
Journal:  Proteins       Date:  2000-11-01

Review 2.  WOOD HEMICELLULOSES. I.

Authors:  T E TIMELL
Journal:  Adv Carbohydr Chem       Date:  1964

3.  DNA sequence of a beta-glucosidase from Ruminococcus albus.

Authors:  K Ohmiya; M Takano; S Shimizu
Journal:  Nucleic Acids Res       Date:  1990-02-11       Impact factor: 16.971

4.  Structure and activity of two metal ion-dependent acetylxylan esterases involved in plant cell wall degradation reveals a close similarity to peptidoglycan deacetylases.

Authors:  Edward J Taylor; Tracey M Gloster; Johan P Turkenburg; Florence Vincent; A Marek Brzozowski; Claude Dupont; François Shareck; Maria S J Centeno; José A M Prates; Vladimír Puchart; Luís M A Ferreira; Carlos M G A Fontes; Peter Biely; Gideon J Davies
Journal:  J Biol Chem       Date:  2006-01-23       Impact factor: 5.157

5.  Use of catabolite repression mutants for fermentation of sugar mixtures to ethanol.

Authors:  N N Nichols; B S Dien; R J Bothast
Journal:  Appl Microbiol Biotechnol       Date:  2001-07       Impact factor: 4.813

6.  Endo-beta-1,4-xylanase families: differences in catalytic properties.

Authors:  P Biely; M Vrsanská; M Tenkanen; D Kluepfel
Journal:  J Biotechnol       Date:  1997-09-16       Impact factor: 3.307

7.  Biochemical characterization of a novel dual-function arabinofuranosidase/xylosidase isolated from a compost starter mixture.

Authors:  Kurt Wagschal; Chamroeun Heng; Charles C Lee; Dominic W S Wong
Journal:  Appl Microbiol Biotechnol       Date:  2008-09-02       Impact factor: 4.813

8.  Crystal structures of decorated xylooligosaccharides bound to a family 10 xylanase from Streptomyces olivaceoviridis E-86.

Authors:  Zui Fujimoto; Satoshi Kaneko; Atsushi Kuno; Hideyuki Kobayashi; Isao Kusakabe; Hiroshi Mizuno
Journal:  J Biol Chem       Date:  2003-12-11       Impact factor: 5.157

Review 9.  Ethanol and thermotolerance in the bioconversion of xylose by yeasts.

Authors:  T W Jeffries; Y S Jin
Journal:  Adv Appl Microbiol       Date:  2000       Impact factor: 5.086

10.  Crystal structure, at 2.6-A resolution, of the Streptomyces lividans xylanase A, a member of the F family of beta-1,4-D-glycanases.

Authors:  U Derewenda; L Swenson; R Green; Y Wei; R Morosoli; F Shareck; D Kluepfel; Z S Derewenda
Journal:  J Biol Chem       Date:  1994-08-19       Impact factor: 5.157

View more
  65 in total

1.  Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85.

Authors:  Shosuke Yoshida; Charles W Hespen; Robert L Beverly; Roderick I Mackie; Isaac K O Cann
Journal:  J Bacteriol       Date:  2010-08-13       Impact factor: 3.490

2.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

Review 3.  Thermophilic Degradation of Hemicellulose, a Critical Feedstock in the Production of Bioenergy and Other Value-Added Products.

Authors:  Isaac Cann; Gabriel V Pereira; Ahmed M Abdel-Hamid; Heejin Kim; Daniel Wefers; Boniface B Kayang; Tamotsu Kanai; Takaaki Sato; Rafael C Bernardi; Haruyuki Atomi; Roderick I Mackie
Journal:  Appl Environ Microbiol       Date:  2020-03-18       Impact factor: 4.792

Review 4.  Thermostable enzymes as biocatalysts in the biofuel industry.

Authors:  Carl J Yeoman; Yejun Han; Dylan Dodd; Charles M Schroeder; Roderick I Mackie; Isaac K O Cann
Journal:  Adv Appl Microbiol       Date:  2010-03-06       Impact factor: 5.086

5.  Biochemical analyses of multiple endoxylanases from the rumen bacterium Ruminococcus albus 8 and their synergistic activities with accessory hemicellulose-degrading enzymes.

Authors:  Young Hwan Moon; Michael Iakiviak; Stefan Bauer; Roderick I Mackie; Isaac K O Cann
Journal:  Appl Environ Microbiol       Date:  2011-06-10       Impact factor: 4.792

6.  Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome.

Authors:  Jie Sun; Fei Wen; Tong Si; Jian-He Xu; Huimin Zhao
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

7.  Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes.

Authors:  Dylan Dodd; Young-Hwan Moon; Kankshita Swaminathan; Roderick I Mackie; Isaac K O Cann
Journal:  J Biol Chem       Date:  2010-07-09       Impact factor: 5.157

8.  Engineering a thermoregulated intein-modified xylanase into maize for consolidated lignocellulosic biomass processing.

Authors:  Binzhang Shen; Xueguang Sun; Xiao Zuo; Taran Shilling; James Apgar; Mary Ross; Oleg Bougri; Vladimir Samoylov; Matthew Parker; Elaina Hancock; Hector Lucero; Benjamin Gray; Nathan A Ekborg; Dongcheng Zhang; Jeremy C Schley Johnson; Gabor Lazar; R Michael Raab
Journal:  Nat Biotechnol       Date:  2012-10-21       Impact factor: 54.908

9.  Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393.

Authors:  Pei-Ying Hong; Michael Iakiviak; Dylan Dodd; Meiling Zhang; Roderick I Mackie; Isaac Cann
Journal:  Appl Environ Microbiol       Date:  2014-01-24       Impact factor: 4.792

10.  The importance of the Abn2 calcium cluster in the endo-1,5-arabinanase activity from Bacillus subtilis.

Authors:  C E McVey; M J Ferreira; B Correia; S Lahiri; D de Sanctis; Maria Arménia Carrondo; P F Lindley; Isabel de Sá Nogueira; Cláudio Manuel Soares; Isabel Bento
Journal:  J Biol Inorg Chem       Date:  2014-02-19       Impact factor: 3.358

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.