Literature DB >> 8045263

Quality and position of the three lac operators of E. coli define efficiency of repression.

S Oehler1, M Amouyal, P Kolkhof, B von Wilcken-Bergmann, B Müller-Hill.   

Abstract

Repression of the lac promoter may be achieved in two different ways: either by interference with the action of RNA polymerase or by interference with CAP activation. We investigated cooperative repression of the Escherichia coli lac operon by systematic conversion of its three natural operators (O1, O2 and O3) on the chromosome. We find that cooperative repression by tetrameric Lac repressor increases with both quality and proximity of the interacting operators. A short distance of 92 bp allows effective repression by two very weak operators (O3, O3). The cooperativity of lac operators is discussed in terms of a local increase of repressor concentration. This increase in concentration depends on flexible DNA which allows loop formation.

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Year:  1994        PMID: 8045263      PMCID: PMC395232          DOI: 10.1002/j.1460-2075.1994.tb06637.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  44 in total

1.  Specific destruction of the second lac operator decreases repression of the lac operon in Escherichia coli fivefold.

Authors:  E Eismann; B von Wilcken-Bergmann; B Müller-Hill
Journal:  J Mol Biol       Date:  1987-06-20       Impact factor: 5.469

2.  Promoters largely determine the efficiency of repressor action.

Authors:  M Lanzer; H Bujard
Journal:  Proc Natl Acad Sci U S A       Date:  1988-12       Impact factor: 11.205

Review 3.  DNA binding by proteins.

Authors:  R Schleif
Journal:  Science       Date:  1988-09-02       Impact factor: 47.728

4.  Recognition helices of lac and lambda repressor are oriented in opposite directions and recognize similar DNA sequences.

Authors:  N Lehming; J Sartorius; S Oehler; B von Wilcken-Bergmann; B Müller-Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

5.  DNA supercoiling promotes formation of a bent repression loop in lac DNA.

Authors:  J A Borowiec; L Zhang; S Sasse-Dwight; J D Gralla
Journal:  J Mol Biol       Date:  1987-07-05       Impact factor: 5.469

6.  Long-range cooperativity between gene regulatory sequences in a prokaryote.

Authors:  G Dandanell; P Valentin-Hansen; J E Larsen; K Hammer
Journal:  Nature       Date:  1987 Feb 26-Mar 4       Impact factor: 49.962

7.  Lac repressor is a transient gene-activating protein.

Authors:  S B Straney; D M Crothers
Journal:  Cell       Date:  1987-12-04       Impact factor: 41.582

8.  DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor.

Authors:  H Krämer; M Amouyal; A Nordheim; B Müller-Hill
Journal:  EMBO J       Date:  1988-02       Impact factor: 11.598

9.  The interaction of the recognition helix of lac repressor with lac operator.

Authors:  N Lehming; J Sartorius; M Niemöller; G Genenger; B v Wilcken-Bergmann; B Müller-Hill
Journal:  EMBO J       Date:  1987-10       Impact factor: 11.598

10.  lac repressor forms loops with linear DNA carrying two suitably spaced lac operators.

Authors:  H Krämer; M Niemöller; M Amouyal; B Revet; B von Wilcken-Bergmann; B Müller-Hill
Journal:  EMBO J       Date:  1987-05       Impact factor: 11.598

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  97 in total

1.  A functional assay in Escherichia coli to detect non-assisted interaction between galactose repressor dimers.

Authors:  N Perez; M Rehault; M Amouyal
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

2.  Regulation of sialic acid catabolism by the DNA binding protein NanR in Escherichia coli.

Authors:  Kathryn A Kalivoda; Susan M Steenbergen; Eric R Vimr; Jacqueline Plumbridge
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

3.  Influence of catabolite repression and inducer exclusion on the bistable behavior of the lac operon.

Authors:  Moisés Santillán; Michael C Mackey
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

4.  Bending the rules of transcriptional repression: tightly looped DNA directly represses T7 RNA polymerase.

Authors:  Troy A Lionberger; Edgar Meyhöfer
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

5.  Accurate prediction of gene expression by integration of DNA sequence statistics with detailed modeling of transcription regulation.

Authors:  Jose M G Vilar
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

6.  Breaking evolutionary constraint with a tradeoff ratchet.

Authors:  Marjon G J de Vos; Alexandre Dawid; Vanda Sunderlikova; Sander J Tans
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-13       Impact factor: 11.205

7.  Comparison of the theoretical and real-world evolutionary potential of a genetic circuit.

Authors:  M Razo-Mejia; J Q Boedicker; D Jones; A DeLuna; J B Kinney; R Phillips
Journal:  Phys Biol       Date:  2014-04-01       Impact factor: 2.583

8.  Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration.

Authors:  Mattias Rydenfelt; Robert Sidney Cox; Hernan Garcia; Rob Phillips
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-01-06

9.  Enhancement of DNA flexibility in vitro and in vivo by HMGB box A proteins carrying box B residues.

Authors:  Nadia T Sebastian; Emily M Bystry; Nicole A Becker; L James Maher
Journal:  Biochemistry       Date:  2009-03-17       Impact factor: 3.162

10.  Optimizing information flow in small genetic networks.

Authors:  Gasper Tkacik; Aleksandra M Walczak; William Bialek
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-29
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