Literature DB >> 8003983

Protein folding dynamics: the diffusion-collision model and experimental data.

M Karplus1, D L Weaver.   

Abstract

The diffusion-collision model of protein folding is assessed. A description is given of the qualitative aspects and quantitative results of the diffusion-collision model and their relation to available experimental data. We consider alternative mechanisms for folding and point out their relationship to the diffusion-collision model. We show that the diffusion-collision model is supported by a growing body of experimental and theoretical evidence, and we outline future directions for developing the model and its applications.

Mesh:

Year:  1994        PMID: 8003983      PMCID: PMC2142854          DOI: 10.1002/pro.5560030413

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  94 in total

1.  An analysis of protein folding pathways.

Authors:  J Moult; R Unger
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

2.  Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first-order phase transition.

Authors:  E I Shakhnovich; A V Finkelstein
Journal:  Biopolymers       Date:  1989-10       Impact factor: 2.505

3.  An early intermediate of refolding alpha-lactalbumin forms within 20 ms.

Authors:  R I Gilmanshin; O B Ptitsyn
Journal:  FEBS Lett       Date:  1987-11-02       Impact factor: 4.124

4.  Diffusion-collision model for the folding kinetics of myoglobin.

Authors:  D Bashford; F E Cohen; M Karplus; I D Kuntz; D L Weaver
Journal:  Proteins       Date:  1988

5.  Is there a single pathway for the folding of a polypeptide chain?

Authors:  S C Harrison; R Durbin
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

6.  Residual helical structure in the C-terminal fragment of cytochrome c.

Authors:  Y Kuroda
Journal:  Biochemistry       Date:  1993-02-09       Impact factor: 3.162

7.  Prediction of protein secondary structure at better than 70% accuracy.

Authors:  B Rost; C Sander
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

8.  Comparison of the transient folding intermediates in lysozyme and alpha-lactalbumin.

Authors:  K Kuwajima; Y Hiraoka; M Ikeguchi; S Sugai
Journal:  Biochemistry       Date:  1985-02-12       Impact factor: 3.162

9.  Molecular model-building by computer.

Authors:  C Levinthal
Journal:  Sci Am       Date:  1966-06       Impact factor: 2.142

10.  Origins of structure in globular proteins.

Authors:  H S Chan; K A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

View more
  103 in total

1.  Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: relative stabilities in experiment and simulations.

Authors:  Y Y Sham; B Ma; C J Tsai; R Nussinov
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

2.  Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking.

Authors:  L B Moran; J P Schneider; A Kentsis; G A Reddy; T R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

Review 3.  Folding and binding cascades: shifts in energy landscapes.

Authors:  C J Tsai; B Ma; R Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

4.  Understanding beta-hairpin formation.

Authors:  A R Dinner; T Lazaridis; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

5.  Distinguishing between sequential and nonsequentially folded proteins: implications for folding and misfolding.

Authors:  C J Tsai; J V Maizel; R Nussinov
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

6.  Cytochrome c folds through a smooth funnel.

Authors:  M Panda; M G Benavides-Garcia; M M Pierce; B T Nall
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

7.  15N NMR relaxation as a probe for helical intrinsic propensity: the case of the unfolded D2 domain of annexin I.

Authors:  F Ochsenbein; R Guerois; J M Neumann; A Sanson; E Guittet; C van Heijenoort
Journal:  J Biomol NMR       Date:  2001-01       Impact factor: 2.835

8.  Meanfield approach to the thermodynamics of protein-solvent systems with application to p53.

Authors:  A R Völkel; J Noolandi
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

9.  Nonglassy kinetics in the folding of a simple single-domain protein.

Authors:  B Gillespie; K W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

10.  Anatomy of protein structures: visualizing how a one-dimensional protein chain folds into a three-dimensional shape.

Authors:  C J Tsai; J V Maizel; R Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.