Literature DB >> 10468538

Folding and binding cascades: shifts in energy landscapes.

C J Tsai, B Ma, R Nussinov.   

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Year:  1999        PMID： 10468538      PMCID： PMC33715          DOI： 10.1073/pnas.96.18.9970

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  18 in total

Review 1.  Folding funnels, binding funnels, and protein function.

Authors:  C J Tsai; S Kumar; B Ma; R Nussinov
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

Review 2.  Is protein folding hierarchic? I. Local structure and peptide folding.

Authors:  R L Baldwin; G D Rose
Journal:  Trends Biochem Sci       Date:  1999-01       Impact factor: 13.807

3.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

Review 4.  Protein folding via binding and vice versa.

Authors:  C J Tsai; D Xu; R Nussinov
Journal:  Fold Des       Date:  1998

Review 5.  From Levinthal to pathways to funnels.

Authors:  K A Dill; H S Chan
Journal:  Nat Struct Biol       Date:  1997-01

6.  Hydrophobic folding units derived from dissimilar monomer structures and their interactions.

Authors:  C J Tsai; R Nussinov
Journal:  Protein Sci       Date:  1997-01       Impact factor: 6.725

7.  First-principles calculation of the folding free energy of a three-helix bundle protein.

Authors:  E M Boczko; C L Brooks
Journal:  Science       Date:  1995-07-21       Impact factor: 47.728

Review 8.  Protein folding dynamics: the diffusion-collision model and experimental data.

Authors:  M Karplus; D L Weaver
Journal:  Protein Sci       Date:  1994-04       Impact factor: 6.725

9.  Analysis of long-range interactions in a model denatured state of staphylococcal nuclease based on correlated changes in backbone dynamics.

Authors:  J F Sinclair; D Shortle
Journal:  Protein Sci       Date:  1999-05       Impact factor: 6.725

10.  Global changes in amide hydrogen exchange rates for a protein antigen in complex with three different antibodies.

Authors:  D C Williams; D C Benjamin; R J Poljak; G S Rule
Journal:  J Mol Biol       Date:  1996-04-12       Impact factor: 5.469
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  136 in total

1.  Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: relative stabilities in experiment and simulations.

Authors:  Y Y Sham; B Ma; C J Tsai; R Nussinov
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

Review 2.  Folding and binding cascades: dynamic landscapes and population shifts.

Authors:  S Kumar; B Ma; C J Tsai; N Sinha; R Nussinov
Journal:  Protein Sci       Date:  2000-01       Impact factor: 6.725

3.  Point mutations and sequence variability in proteins: redistributions of preexisting populations.

Authors:  N Sinha; R Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

4.  A systematic study of the vibrational free energies of polypeptides in folded and random states.

Authors:  B Ma; C J Tsai; R Nussinov
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

Review 5.  Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations.

Authors:  Buyong Ma; Maxim Shatsky; Haim J Wolfson; Ruth Nussinov
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

6.  Calculations of free-energy contributions to protein-RNA complex stabilization.

Authors:  M A Olson
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

7.  Small-world communication of residues and significance for protein dynamics.

Authors:  Ali Rana Atilgan; Pelin Akan; Canan Baysal
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

8.  Funnel sculpting for in silico assembly of secondary structure elements of proteins.

Authors:  Boris Fain; Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-18       Impact factor: 11.205

9.  Simulating disorder-order transitions in molecular recognition of unstructured proteins: where folding meets binding.

Authors:  Gennady M Verkhivker; Djamal Bouzida; Daniel K Gehlhaar; Paul A Rejto; Stephan T Freer; Peter W Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-15       Impact factor: 11.205

10.  Packing interface energetics in different crystal forms of the λ Cro dimer.

Authors:  Logan S Ahlstrom; Osamu Miyashita
Journal:  Proteins       Date:  2013-11-23
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