Literature DB >> 3858860

Is there a single pathway for the folding of a polypeptide chain?

S C Harrison, R Durbin.   

Abstract

We argue that folding of the compact domains of proteins can occur with adequate rapidity in the absence of a unique directed mechanism, provided that native-like local structure dominates the folding process. We further suggest that the evolution of amino acid sequences should favor multiple paths to the folded state. Existing physicochemical and mutational data are not inconsistent with a many-pathway model. The analogy of a jigsaw puzzle, with multiple routes to a unique solution, appears to be particularly apt.

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Year:  1985        PMID: 3858860      PMCID: PMC397927          DOI: 10.1073/pnas.82.12.4028

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Protein-folding dynamics.

Authors:  M Karplus; D L Weaver
Journal:  Nature       Date:  1976-04-01       Impact factor: 49.962

2.  Structural patterns in globular proteins.

Authors:  M Levitt; C Chothia
Journal:  Nature       Date:  1976-06-17       Impact factor: 49.962

3.  Role of proline isomerization in folding of ribonuclease A at low temperatures.

Authors:  K H Cook; F X Schmid; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1979-12       Impact factor: 11.205

Review 4.  Experimental studies of protein folding and unfolding.

Authors:  T E Creighton
Journal:  Prog Biophys Mol Biol       Date:  1978       Impact factor: 3.667

5.  Hierarchic organization of domains in globular proteins.

Authors:  G D Rose
Journal:  J Mol Biol       Date:  1979-11-05       Impact factor: 5.469

6.  Detection of an early intermediate in the folding of ribonuclease A by protection of amide protons against exchange.

Authors:  F X Schmid; R L Baldwin
Journal:  J Mol Biol       Date:  1979-11-25       Impact factor: 5.469

7.  Recombination of S-peptide with S-protein during folding of ribonuclease S. I. Folding pathways of the slow-folding and fast-folding classes of unfolded S-protein.

Authors:  A M Labhardt; R L Baldwin
Journal:  J Mol Biol       Date:  1979-11-25       Impact factor: 5.469

8.  Recombination of S-peptide with S-protein during folding of ribonuclease S. II. Kinetic characterization of a stable folding intermediate shown by S-protein at pH 1.7.

Authors:  A M Labhardt; R L Baldwin
Journal:  J Mol Biol       Date:  1979-11-25       Impact factor: 5.469

9.  Why genes in pieces?

Authors:  W Gilbert
Journal:  Nature       Date:  1978-02-09       Impact factor: 49.962

10.  The tree structural organization of proteins.

Authors:  G M Crippen
Journal:  J Mol Biol       Date:  1978-12-15       Impact factor: 5.469

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  42 in total

1.  Measures of residue density in protein structures.

Authors:  F Baud; S Karlin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

2.  Folding kinetics of designer proteins. Application of the diffusion-collision model to a de novo designed four-helix bundle.

Authors:  K K Yapa; D L Weaver
Journal:  Biophys J       Date:  1992-07       Impact factor: 4.033

3.  Protein folding funnels: a kinetic approach to the sequence-structure relationship.

Authors:  P E Leopold; M Montal; J N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

Review 4.  Protein folding.

Authors:  T E Creighton
Journal:  Biochem J       Date:  1990-08-15       Impact factor: 3.857

5.  Force-dependent switch in protein unfolding pathways and transition-state movements.

Authors:  Pavel I Zhuravlev; Michael Hinczewski; Shaon Chakrabarti; Susan Marqusee; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-27       Impact factor: 11.205

6.  Cooperativity in protein-folding kinetics.

Authors:  K A Dill; K M Fiebig; H S Chan
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-01       Impact factor: 11.205

7.  Chaperonin-facilitated protein folding: optimization of rate and yield by an iterative annealing mechanism.

Authors:  M J Todd; G H Lorimer; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-30       Impact factor: 11.205

8.  Protein folding: matching theory and experiment.

Authors:  D V Laurents; R L Baldwin
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

9.  Enhancing Virtual Screening Performance of Protein Kinases with Molecular Dynamics Simulations.

Authors:  Tavina L Offutt; Robert V Swift; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2016-10-03       Impact factor: 4.956

10.  Crystal structure of an extensively simplified variant of bovine pancreatic trypsin inhibitor in which over one-third of the residues are alanines.

Authors:  Mohammad Monirul Islam; Shihori Sohya; Keiichi Noguchi; Masafumi Yohda; Yutaka Kuroda
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-30       Impact factor: 11.205

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