Literature DB >> 7987228

A new family of carbon-nitrogen hydrolases.

P Bork1, E V Koonin.   

Abstract

Using computer methods for database search and multiple alignment, statistically significant sequence similarities were identified between several nitrilases with distinct substrate specificity, cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. All these proteins appear to be involved in the reduction of organic nitrogen compounds and ammonia production. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. The new family of enzymes is characterized by several conserved motifs, one of which contains an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis.

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Year:  1994        PMID: 7987228      PMCID: PMC2142920          DOI: 10.1002/pro.5560030821

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  13 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  A workbench for multiple alignment construction and analysis.

Authors:  G D Schuler; S F Altschul; D J Lipman
Journal:  Proteins       Date:  1991

3.  CLUSTAL V: improved software for multiple sequence alignment.

Authors:  D G Higgins; A J Bleasby; R Fuchs
Journal:  Comput Appl Biosci       Date:  1992-04

4.  A novel nitrilase, arylacetonitrilase, of Alcaligenes faecalis JM3. Purification and characterization.

Authors:  T Nagasawa; J Mauger; H Yamada
Journal:  Eur J Biochem       Date:  1990-12-27

5.  A fast, sensitive pattern-matching approach for protein sequences.

Authors:  K Rohde; P Bork
Journal:  Comput Appl Biosci       Date:  1993-04

6.  Identification of protein coding regions by database similarity search.

Authors:  W Gish; D J States
Journal:  Nat Genet       Date:  1993-03       Impact factor: 38.330

7.  The SWISS-PROT protein sequence data bank, recent developments.

Authors:  A Bairoch; B Boeckmann
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

8.  Primary structure of an aliphatic nitrile-degrading enzyme, aliphatic nitrilase, from Rhodococcus rhodochrous K22 and expression of its gene and identification of its active site residue.

Authors:  M Kobayashi; N Yanaka; T Nagasawa; H Yamada
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

9.  Nitrilase in biosynthesis of the plant hormone indole-3-acetic acid from indole-3-acetonitrile: cloning of the Alcaligenes gene and site-directed mutagenesis of cysteine residues.

Authors:  M Kobayashi; H Izui; T Nagasawa; H Yamada
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-01       Impact factor: 11.205

10.  Yeast chromosome III: new gene functions.

Authors:  E V Koonin; P Bork; C Sander
Journal:  EMBO J       Date:  1994-02-01       Impact factor: 11.598

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  33 in total

1.  Substitution of Glu-59 by Val in amidase from Pseudomonas aeruginosa results in a catalytically inactive enzyme.

Authors:  A Karmali; R Tata; P R Brown
Journal:  Mol Biotechnol       Date:  2000-09       Impact factor: 2.695

2.  Identification of active sites in amidase: evolutionary relationship between amide bond- and peptide bond-cleaving enzymes.

Authors:  M Kobayashi; Y Fujiwara; M Goda; H Komeda; S Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

3.  Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris.

Authors:  Ying-Der Tsai; Ko-Hsin Chin; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-09-30

4.  Unique aliphatic amidase from a psychrotrophic and haloalkaliphilic nesterenkonia isolate.

Authors:  A J M Nel; I M Tuffin; B T Sewell; D A Cowan
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

5.  Characterization of plant beta-ureidopropionase and functional overexpression in Escherichia coli.

Authors:  T A Walsh; S B Green; I M Larrinua; P R Schmitzer
Journal:  Plant Physiol       Date:  2001-02       Impact factor: 8.340

6.  Biochemical and mutational studies of the Bacillus cereus CECT 5050T formamidase support the existence of a C-E-E-K tetrad in several members of the nitrilase superfamily.

Authors:  Pablo Soriano-Maldonado; Ana Isabel Martínez-Gómez; Montserrat Andújar-Sánchez; José L Neira; Josefa María Clemente-Jiménez; Francisco Javier Las Heras-Vázquez; Felipe Rodríguez-Vico; Sergio Martínez-Rodríguez
Journal:  Appl Environ Microbiol       Date:  2011-06-24       Impact factor: 4.792

7.  Evidence that cysteine-166 is the active-site nucleophile of Pseudomonas aeruginosa amidase: crystallization and preliminary X-ray diffraction analysis of the enzyme.

Authors:  S Farnaud; R Tata; M K Sohi; T Wan; P R Brown; B J Sutton
Journal:  Biochem J       Date:  1999-06-15       Impact factor: 3.857

8.  Functional proteomic and structural insights into molecular recognition in the nitrilase family enzymes.

Authors:  Katherine T Barglow; Kumar S Saikatendu; Michael H Bracey; Ruth Huey; Garrett M Morris; Arthur J Olson; Raymond C Stevens; Benjamin F Cravatt
Journal:  Biochemistry       Date:  2008-12-23       Impact factor: 3.162

9.  Transcriptional regulation of the Rhodococcus rhodochrous J1 nitA gene encoding a nitrilase.

Authors:  H Komeda; Y Hori; M Kobayashi; S Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

10.  A nitrilase-like protein interacts with GCC box DNA-binding proteins involved in ethylene and defense responses.

Authors:  P Xu; M L Narasimhan; T Samson; M A Coca; G H Huh; J Zhou; G B Martin; P M Hasegawa; R A Bressan
Journal:  Plant Physiol       Date:  1998-11       Impact factor: 8.340

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