Literature DB >> 17012795

Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris.

Ying-Der Tsai1, Ko-Hsin Chin, Hui-Lin Shr, Fei Philip Gao, Ping-Chiang Lyu, Andrew H-J Wang, Shan-Ho Chou.   

Abstract

CN-hydrolase superfamily proteins are involved in a wide variety of non-peptide carbon-nitrogen hydrolysis reactions, producing some important natural products such as auxin, biotin, precursors of antibiotics etc. These reactions all involve attack on a cyano or carbonyl carbon by a conserved novel catalytic triad Glu-Lys-Cys through a thiol acylenzyme intermediate. However, classification into the CN-hydrolase superfamily based on sequence similarity alone is not straightforward and further structural data are necessary to improve this categorization. Here, the cloning, expression, crystallization and preliminary X-ray analysis of XC1258, a CN-hydrolase superfamily protein from the plant pathogen Xanthomonas campestris (Xcc), are reported. The SeMet-substituted XC1258 crystals diffracted to a resolution of 1.73 A. They are orthorhombic and belong to space group P2(1)2(1)2, with unit-cell parameters a = 143.8, b = 154.63, c = 51.3 A, respectively.

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Year:  2006        PMID: 17012795      PMCID: PMC2225184          DOI: 10.1107/S1744309106035433

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

1.  The Pfam protein families database.

Authors:  A Bateman; E Birney; R Durbin; S R Eddy; K L Howe; E L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Crystal structure of a putative CN hydrolase from yeast.

Authors:  Desigan Kumaran; Subramaniam Eswaramoorthy; Sue Ellen Gerchman; Helen Kycia; F William Studier; Subramanyam Swaminathan
Journal:  Proteins       Date:  2003-08-01

3.  Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris.

Authors:  Yan-You Wu; Ko-Hsin Chin; Chia-Cheng Chou; Cheng-Chung Lee; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-09-30

4.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  [28] Phase determination from multiwavelength anomalous diffraction measurements.

Authors:  Wayne A Hendrickson; Craig M Ogata
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Crystal structure and site-directed mutagenesis studies of N-carbamoyl-D-amino-acid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft.

Authors:  W C Wang; W H Hsu; F T Chien; C Y Chen
Journal:  J Mol Biol       Date:  2001-02-16       Impact factor: 5.469

7.  Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.

Authors:  T Nakai; T Hasegawa; E Yamashita; M Yamamoto; T Kumasaka; T Ueki; H Nanba; Y Ikenaka; S Takahashi; M Sato; T Tsukihara
Journal:  Structure       Date:  2000-07-15       Impact factor: 5.006

8.  Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers.

Authors:  H C Pace; S C Hodawadekar; A Draganescu; J Huang; P Bieganowski; Y Pekarsky; C M Croce; C Brenner
Journal:  Curr Biol       Date:  2000 Jul 27-Aug 10       Impact factor: 10.834

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

Review 10.  The nitrilase superfamily: classification, structure and function.

Authors:  H C Pace; C Brenner
Journal:  Genome Biol       Date:  2001-01-15       Impact factor: 13.583

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