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Literature DB >> 7937061

OWL--a non-redundant composite protein sequence database.

Abstract

A comprehensive, non-redundant composite protein sequence database is described. The database, OWL, is an amalgam of data from six publicly-available primary sources, and is generated using strict redundancy criteria. The database is updated monthly and its size has increased almost eight-fold in the last six years: the current version contains > 76,000 entries. For added flexibility, OWL is distributed with a tailor-made query language, together with a number of programs for database exploration, information retrieval and sequence analysis, which together form an integrated database and software resource for protein sequences.

Mesh：

Substances：
Proteins

Year: 1994 PMID： 7937061 PMCID： PMC308323

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

19 in total

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Authors: D J Parry-Smith; T K Attwood
Journal: Comput Appl Biosci Date: 1991-04

2. SERPENT--an information storage and analysis resource for protein sequences.

Authors: D Akrigg; T K Attwood; A J Bleasby; J B Findlay; A C North; N A Maughan; D J Parry-Smith; D N Perkins; J C Wootton
Journal: Comput Appl Biosci Date: 1992-06

3. The Protein Data Bank: a computer-based archival file for macromolecular structures.

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Journal: J Mol Biol Date: 1977-05-25 Impact factor: 5.469

4. Construction of validated, non-redundant composite protein sequence databases.

Authors: A J Bleasby; J C Wootton
Journal: Protein Eng Date: 1990-01

5. Improved tools for biological sequence comparison.

Authors: W R Pearson; D J Lipman
Journal: Proc Natl Acad Sci U S A Date: 1988-04 Impact factor: 11.205

6. The protein identification resource (PIR).

Authors: D G George; W C Barker; L T Hunt
Journal: Nucleic Acids Res Date: 1986-01-10 Impact factor: 16.971

7. Design of a discriminating fingerprint for G-protein-coupled receptors.

Authors: T K Attwood; J B Findlay
Journal: Protein Eng Date: 1993-02

8. PRINTS--a protein motif fingerprint database.

Authors: T K Attwood; M E Beck
Journal: Protein Eng Date: 1994-07

9. The GenBank nucleic acid sequence database.

Authors: C Burks; J W Fickett; W B Goad; M Kanehisa; F I Lewitter; W P Rindone; C D Swindell; C S Tung; H S Bilofsky
Journal: Comput Appl Biosci Date: 1985-12

10. Similar amino acid sequences: chance or common ancestry?

Authors: R F Doolittle
Journal: Science Date: 1981-10-09 Impact factor: 47.728

21 in total

1. HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project.

Authors: R Kikuno; T Nagase; M Suyama; M Waki; M Hirosawa; O Ohara
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. PRINTS-S: the database formerly known as PRINTS.

Authors: T K Attwood; M D Croning; D R Flower; A P Lewis; J E Mabey; P Scordis; J N Selley; W Wright
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

3. Assigning genomic sequences to CATH.

Authors: F M Pearl; D Lee; J E Bray; I Sillitoe; A E Todd; A P Harrison; J M Thornton; C A Orengo
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

4. De novo amyloid proteins from designed combinatorial libraries.

Authors: M W West; W Wang; J Patterson; J D Mancias; J R Beasley; M H Hecht
Journal: Proc Natl Acad Sci U S A Date: 1999-09-28 Impact factor: 11.205

5. Contribution of energy values to the analysis of global searching molecular dynamics simulations of transmembrane helical bundles.

Authors: Jaume Torres; John A G Briggs; Isaiah T Arkin
Journal: Biophys J Date: 2002-06 Impact factor: 4.033

6. Proteins with H-bond packing defects are highly interactive with lipid bilayers: Implications for amyloidogenesis.

Authors: Ariel Fernández; R Stephen Berry
Journal: Proc Natl Acad Sci U S A Date: 2003-02-18 Impact factor: 11.205

7. Extent of hydrogen-bond protection in folded proteins: a constraint on packing architectures.

Authors: Ariel Fernández; R Stephen Berry
Journal: Biophys J Date: 2002-11 Impact factor: 4.033

Review 8. Bioinformatics methods to predict protein structure and function. A practical approach.

Authors: Yvonne J K Edwards; Amanda Cottage
Journal: Mol Biotechnol Date: 2003-02 Impact factor: 2.695

9. Purification and kinetic characterization of the magnesium protoporphyrin IX methyltransferase from Synechocystis PCC6803.

Authors: Mark Shepherd; James D Reid; C Neil Hunter
Journal: Biochem J Date: 2003-04-15 Impact factor: 3.857

10. Crystal structure of the sensory domain of Escherichia coli CadC, a member of the ToxR-like protein family.

Authors: Andreas Eichinger; Ina Haneburger; Christiane Koller; Kirsten Jung; Arne Skerra
Journal: Protein Sci Date: 2011-04 Impact factor: 6.725