Literature DB >> 2059849

SOMAP: a novel interactive approach to multiple protein sequences alignment.

D J Parry-Smith1, T K Attwood.   

Abstract

A novel interactive method for generating multiple protein sequence alignments is described. The program has no internal limit to the number or length of sequences it can handle and is designed for use with DEC VAX processors running the VMS operating system. The approach used is essentially one of manual sequence manipulation, aided by built-in symbolic displays of identities and similarities, and strict and 'fuzzy' (ambiguous) pattern-matching facilities. Additional flexibility is provided by means of an interface to a publicly available automatic alignment system and to a comprehensive sequence analysis package.

Mesh：

Year:  1991        PMID： 2059849     DOI： 10.1093/bioinformatics/7.2.233

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  14 in total

1.  PRINTS-S: the database formerly known as PRINTS.

Authors:  T K Attwood; M D Croning; D R Flower; A P Lewis; J E Mabey; P Scordis; J N Selley; W Wright
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.

Authors:  Steven P Bennett; Lin Lu; Douglas L Brutlag
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Structure and sequence relationships in the lipocalins and related proteins.

Authors:  D R Flower; A C North; T K Attwood
Journal:  Protein Sci       Date:  1993-05       Impact factor: 6.725

4.  The PRINTS protein fingerprint database in its fifth year.

Authors:  T K Attwood; M E Beck; D R Flower; P Scordis; J N Selley
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

5.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

6.  Novel developments with the PRINTS protein fingerprint database.

Authors:  T K Attwood; M E Beck; A J Bleasby; K Degtyarenko; A D Michie; D J Parry-Smith
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

7.  Sequence analysis of two tandemly linked Em genes from wheat.

Authors:  T S Futers; S Onde; M Turet; A C Cuming
Journal:  Plant Mol Biol       Date:  1993-12       Impact factor: 4.076

8.  PRINTS--a database of protein motif fingerprints.

Authors:  T K Attwood; M E Beck; A J Bleasby; D J Parry-Smith
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

9.  OWL--a non-redundant composite protein sequence database.

Authors:  A J Bleasby; D Akrigg; T K Attwood
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

10.  10th International Conference on Methods in Protein Structure Analysis. September 8-13, 1994, Snowbird, Utah. Short communications and abstracts.

Authors: 
Journal:  J Protein Chem       Date:  1994-07
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.