Literature DB >> 7841332

Protein and nucleic acid hydration and cosolvent interactions: establishment of reliable baseline values at high cosolvent concentrations.

H Eisenberg1.   

Abstract

Hydration and cosolvent interactions of biological macromolecules can be derived, subject to excluded volume corrections, from studies of density increments at constant chemical potentials of diffusible solutes through a semipermeable membrane. In addition to precision density determinations of solutions dialyzed to equilibrium, the analytical ultracentrifuge, static and dynamic light and small angle X-ray and neutron scattering, and combined pairwise use of, for instance, ultracentrifugation and neutron scattering, considerably strengthen the experimental analysis and its interpretation. We have examined hydration of bovine serum albumin (BSA) in the native and denatured states, and binding of the denaturant guanidinium chloride (GdmCl) to the latter form; hydration of DNA and interaction with NaCl and CsCl; revised values of the halophilic malate dehydrogenase (hMDH) tetramer hydration and 'binding' of salts; probing of nucleosome core particle hydration as distinct from and additionally to the evaluation of volume exclusion (holes), by use of variously sized sugar related probes. Conclusions presented are compared to results from precision calorimetry and from X-ray crystallography structures, whenever applicable, and comparisons made with alternative interpretations and experimental approaches.

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Year:  1994        PMID: 7841332     DOI: 10.1016/0301-4622(94)00076-x

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  13 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Assessing accumulated solvent near a macromolecular solute by preferential interaction coefficients.

Authors:  Karen E S Tang; Victor A Bloomfield
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

3.  Adair was right in his time.

Authors:  Henryk Eisenberg
Journal:  Eur Biophys J       Date:  2003-04-24       Impact factor: 1.733

4.  Modern analytical ultracentrifugation in protein science: look forward, not back.

Authors:  Henryk Eisenberg
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

5.  Hfqs in Bacillus anthracis: Role of protein sequence variation in the structure and function of proteins in the Hfq family.

Authors:  Catherine Vrentas; Rodolfo Ghirlando; Andrea Keefer; Zonglin Hu; Aurelie Tomczak; Apostolos G Gittis; Athulaprabha Murthi; David N Garboczi; Susan Gottesman; Stephen H Leppla
Journal:  Protein Sci       Date:  2015-08-30       Impact factor: 6.725

6.  Protein folding, stability, and solvation structure in osmolyte solutions.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

Review 7.  Recent applications of Kirkwood-Buff theory to biological systems.

Authors:  Veronica Pierce; Myungshim Kang; Mahalaxmi Aburi; Samantha Weerasinghe; Paul E Smith
Journal:  Cell Biochem Biophys       Date:  2007-11-28       Impact factor: 2.194

8.  Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences.

Authors:  N Y Sidorova; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

9.  Construction of hydrodynamic bead models from high-resolution X-ray crystallographic or nuclear magnetic resonance data.

Authors:  O Byron
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

10.  Thermodynamic and structural basis for relaxation of specificity in protein-DNA recognition.

Authors:  Paul J Sapienza; Tianyi Niu; Michael R Kurpiewski; Arabela Grigorescu; Linda Jen-Jacobson
Journal:  J Mol Biol       Date:  2013-09-14       Impact factor: 5.469

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