Literature DB >> 29851291

Overview of Next-Generation Sequencing Technologies.

Barton E Slatko1, Andrew F Gardner1, Frederick M Ausubel2.   

Abstract

High throughput DNA sequencing methodology (next generation sequencing; NGS) has rapidly evolved over the past 15 years and new methods are continually being commercialized. As the technology develops, so do increases in the number of corresponding applications for basic and applied science. The purpose of this review is to provide a compendium of NGS methodologies and associated applications. Each brief discussion is followed by web links to the manufacturer and/or web-based visualizations. Keyword searches, such as with Google, may also provide helpful internet links and information. © 2018 by John Wiley & Sons, Inc.
Copyright © 2018 John Wiley & Sons, Inc.

Entities:  

Keywords:  NGS; Sanger sequencing; next-generation sequencing

Mesh:

Year:  2018        PMID: 29851291      PMCID: PMC6020069          DOI: 10.1002/cpmb.59

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  47 in total

1.  A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase.

Authors:  F Sanger; A R Coulson
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

2.  Genomes for all.

Authors:  George M Church
Journal:  Sci Am       Date:  2006-01       Impact factor: 2.142

Review 3.  The challenges of sequencing by synthesis.

Authors:  Carl W Fuller; Lyle R Middendorf; Steven A Benner; George M Church; Timothy Harris; Xiaohua Huang; Stevan B Jovanovich; John R Nelson; Jeffery A Schloss; David C Schwartz; Dmitri V Vezenov
Journal:  Nat Biotechnol       Date:  2009-11-06       Impact factor: 54.908

Review 4.  Sequencing technologies - the next generation.

Authors:  Michael L Metzker
Journal:  Nat Rev Genet       Date:  2009-12-08       Impact factor: 53.242

Review 5.  Optical DNA mapping in nanofluidic devices: principles and applications.

Authors:  Vilhelm Müller; Fredrik Westerlund
Journal:  Lab Chip       Date:  2017-02-14       Impact factor: 6.799

6.  Direct detection of DNA methylation during single-molecule, real-time sequencing.

Authors:  Benjamin A Flusberg; Dale R Webster; Jessica H Lee; Kevin J Travers; Eric C Olivares; Tyson A Clark; Jonas Korlach; Stephen W Turner
Journal:  Nat Methods       Date:  2010-05-09       Impact factor: 28.547

Review 7.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

8.  A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Authors:  Michael A Quail; Miriam Smith; Paul Coupland; Thomas D Otto; Simon R Harris; Thomas R Connor; Anna Bertoni; Harold P Swerdlow; Yong Gu
Journal:  BMC Genomics       Date:  2012-07-24       Impact factor: 3.969

9.  The methylomes of six bacteria.

Authors:  Iain A Murray; Tyson A Clark; Richard D Morgan; Matthew Boitano; Brian P Anton; Khai Luong; Alexey Fomenkov; Stephen W Turner; Jonas Korlach; Richard J Roberts
Journal:  Nucleic Acids Res       Date:  2012-10-02       Impact factor: 16.971

10.  Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing.

Authors:  Minh Duc Cao; Devika Ganesamoorthy; Alysha G Elliott; Huihui Zhang; Matthew A Cooper; Lachlan J M Coin
Journal:  Gigascience       Date:  2016-07-26       Impact factor: 6.524

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  103 in total

Review 1.  Omics analyses in peritoneal metastasis-utility in the management of peritoneal metastases from colorectal cancer and pseudomyxoma peritonei: a narrative review.

Authors:  Christin Lund-Andersen; Annette Torgunrud; Karianne Giller Fleten; Kjersti Flatmark
Journal:  J Gastrointest Oncol       Date:  2021-04

Review 2.  Back to the Colorectal Cancer Consensus Molecular Subtype Future.

Authors:  David G Menter; Jennifer S Davis; Bradley M Broom; Michael J Overman; Jeffrey Morris; Scott Kopetz
Journal:  Curr Gastroenterol Rep       Date:  2019-01-30

Review 3.  Pediatric pharmacogenomics: challenges and opportunities: on behalf of the Sanford Children's Genomic Medicine Consortium.

Authors:  David Gregornik; Daria Salyakina; Marilyn Brown; Samuel Roiko; Kenneth Ramos
Journal:  Pharmacogenomics J       Date:  2020-08-26       Impact factor: 3.550

Review 4.  Helicobacter pylori infection and antibiotic resistance - from biology to clinical implications.

Authors:  Evariste Tshibangu-Kabamba; Yoshio Yamaoka
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2021-05-17       Impact factor: 46.802

5.  LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data.

Authors:  Ahmed Al Qaffas; Jenna Nichols; Andrew J Davison; Amine Ourahmane; Laura Hertel; Michael A McVoy; Salvatore Camiolo
Journal:  Virus Evol       Date:  2021-04-23

Review 6.  Review of Current COVID-19 Diagnostics and Opportunities for Further Development.

Authors:  Yan Mardian; Herman Kosasih; Muhammad Karyana; Aaron Neal; Chuen-Yen Lau
Journal:  Front Med (Lausanne)       Date:  2021-05-07

7.  Isolation of Highly Purified and Viable Retinal Endothelial Cells.

Authors:  Nicholas W Chavkin; Kenneth Walsh; Karen K Hirschi
Journal:  J Vasc Res       Date:  2020-10-06       Impact factor: 1.934

8.  Assessment of the Implementation of Pharmacogenomic Testing in a Pediatric Tertiary Care Setting.

Authors:  Iris Cohn; Roozbeh Manshaei; Eriskay Liston; John B A Okello; Reem Khan; Meredith R Curtis; Abby J Krupski; Rebekah K Jobling; Kelsey Kalbfleisch; Tara A Paton; Miriam S Reuter; Robin Z Hayeems; Ruud H J Verstegen; Aaron Goldman; Raymond H Kim; Shinya Ito
Journal:  JAMA Netw Open       Date:  2021-05-03

Review 9.  Benign vs malignant pancreatic lesions: Molecular insights to an ongoing debate.

Authors:  Mahmoud Aldyab; Tony El Jabbour; Megan Parilla; Hwajeong Lee
Journal:  World J Gastrointest Surg       Date:  2021-05-27

10.  Pan-Genome miRNomics in Brachypodium.

Authors:  Tugdem Muslu; Sezgi Biyiklioglu-Kaya; Bala Ani Akpinar; Meral Yuce; Hikmet Budak
Journal:  Plants (Basel)       Date:  2021-05-16
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