Literature DB >> 7719024

Construction of a porcine YAC library and mapping of the cardiac muscle ryanodine receptor gene to chromosome 14q22-q23.

T Leeb1, G Rettenberger, H Hameister, G Brem, B Brenig.   

Abstract

Large-scale physical mapping of the porcine genome has been limited because up to now no suitable genomic libraries for this purpose have been available. Therefore, we have constructed a yeast artificial chromosome (YAC) library from porcine lymphocytes. The library was cloned in the amplifiable vector pCGS966. A total of 10080 YAC clones was obtained and has been ordered into 105 96-well microtiter plates. An average insert size of 300 kb was calculated from the analysis of 78 randomly selected clones, giving a one-fold coverage of the porcine genome. To analyze the complexity, we have screened the library for five different genes and isolated four different clones containing parts of three of these genes. One YAC clone harboring parts of the porcine cardiac muscle ryanodine receptor (RYR2) gene allowed us to assign this locus to Chromosome (Chr) 14q22-q23. The data were confirmed by PCR analysis of a rodent-porcine hybrid cell panel.

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Year:  1995        PMID: 7719024     DOI: 10.1007/bf00350891

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  34 in total

1.  Amplification of large artificial chromosomes.

Authors:  D R Smith; A P Smyth; D T Moir
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

2.  Yeast artificial chromosome libraries containing large inserts from mouse and human DNA.

Authors:  Z Larin; A P Monaco; H Lehrach
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-15       Impact factor: 11.205

3.  Construction of a human chromosome 4 YAC pool and analysis of artificial chromosome stability.

Authors:  H M Sleister; K A Mills; S E Blackwell; A M Killary; J C Murray; R E Malone
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

Review 4.  Yeast artificial chromosome-based genome mapping: some lessons from Xq24-q28.

Authors:  D Schlessinger; R D Little; D Freije; F Abidi; I Zucchi; G Porta; G Pilia; R Nagaraja; S K Johnson; J Y Yoon; A Srivastava; J Kere; G Palmieri; A Ciccodicola; V Montanaro; G Romano; A Casamassimi; M D'Urso
Journal:  Genomics       Date:  1991-12       Impact factor: 5.736

5.  Transfer of a yeast artificial chromosome carrying human DNA from Saccharomyces cerevisiae into mammalian cells.

Authors:  V Pachnis; L Pevny; R Rothstein; F Costantini
Journal:  Proc Natl Acad Sci U S A       Date:  1990-07       Impact factor: 11.205

6.  Statistical decision rules concerning synteny or independence between markers.

Authors:  C Chevalet; F Corpet
Journal:  Cytogenet Cell Genet       Date:  1986

7.  A human genome YAC library in a selectable high-copy-number vector.

Authors:  D T Moir; T E Dorman; A P Smyth; D R Smith
Journal:  Gene       Date:  1993-03-30       Impact factor: 3.688

8.  Genome linking with yeast artificial chromosomes.

Authors:  A Coulson; R Waterston; J Kiff; J Sulston; Y Kohara
Journal:  Nature       Date:  1988-09-08       Impact factor: 49.962

9.  Standard karyotype of the domestic pig. Committee for the Standardized Karyotype of the Domestic Pig.

Authors:  I Gustavsson
Journal:  Hereditas       Date:  1988       Impact factor: 3.271

10.  Chromosomal localization of murine ryanodine receptor genes RYR1, RYR2, and RYR3 by in situ hybridization.

Authors:  M G Mattei; G Giannini; F Moscatelli; V Sorrentino
Journal:  Genomics       Date:  1994-07-01       Impact factor: 5.736

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  7 in total

1.  Porcine 5S rRNA genes map to 14q23 revealing syntenic relation to human HSPA6- and 7.

Authors:  B Lomholt; K Christensen; C Hallenberg; S Frederiksen
Journal:  Mamm Genome       Date:  1995-06       Impact factor: 2.957

2.  Assignment of pig immunoglobulin kappa gene IGKC, to chromosome 3q12-q14 by fluorescence in situ hybridization (FISH).

Authors:  G Rettenberger; J Bruch; T Leeb; B Brenig; C Klett; H Hameister
Journal:  Mamm Genome       Date:  1996-04       Impact factor: 2.957

3.  Expansion of the pig comparative map by expressed sequence tags (EST) mapping.

Authors:  A K Fridolfsson; T Hori; A K Winterø; M Fredholm; M Yerle; A Robic; L Andersson; H Ellegren
Journal:  Mamm Genome       Date:  1997-12       Impact factor: 2.957

4.  Construction of a swine YAC library allowing an efficient recovery of unique and centromeric repeated sequences.

Authors:  C Rogel-Gaillard; N Bourgeaux; J C Save; C Renard; P Coullin; P Pinton; M Yerle; M Vaiman; P Chardon
Journal:  Mamm Genome       Date:  1997-03       Impact factor: 2.957

5.  Construction and characterization of a large insert porcine YAC library.

Authors:  L J Alexander; T P Smith; C W Beattie; M F Broom
Journal:  Mamm Genome       Date:  1997-01       Impact factor: 2.957

6.  The cytogenetic map of the domestic pig.

Authors:  M Yerle; Y Lahbib-Mansais; P Pinton; A Robic; A Goureau; D Milan; J Gellin
Journal:  Mamm Genome       Date:  1997-08       Impact factor: 2.957

7.  Mapping of the porcine urate oxidase and transforming growth factor beta 2 genes by fluorescence in situ hybridization.

Authors:  G Rettenberger; T Leeb; S Meier-Ewert; J Bruch; C Klett; B Brenig; H Hameister
Journal:  Chromosome Res       Date:  1996-02       Impact factor: 5.239

  7 in total

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