Literature DB >> 9383283

Expansion of the pig comparative map by expressed sequence tags (EST) mapping.

A K Fridolfsson1, T Hori, A K Winterø, M Fredholm, M Yerle, A Robic, L Andersson, H Ellegren.   

Abstract

We have used a PCR-based approach for the genetical and physical mapping of 34 transcripts isolated from a porcine small intestine cDNA library. All but one gene were regionally localized by using a somatic pig-rodent cell hybrid panel, and 12 genes were mapped by linkage analysis of single-stranded conformational polymorphisms developed in 3' untranslated regions of transcripts. For 20 of the transcripts, the human homolog has already been mapped. This study thus represents a significant contribution to the pig comparative map. Some important findings were that we could clarify the extent of a previously identified inversion event in a region of conserved synteny between SSC6q and HSA1p, that SSC14q does contain a region homologous to HSA1, a situation not clear from earlier ZOO-FISH studies, and that the homology between SSC17 and HSA20 includes the p-arm of HSA20.

Entities:  

Mesh:

Substances:

Year:  1997        PMID: 9383283     DOI: 10.1007/s003359900609

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  26 in total

1.  Mapping genes in the mouse using single-strand conformation polymorphism analysis of recombinant inbred strains and interspecific crosses.

Authors:  D R Beier; H Dushkin; D J Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-01       Impact factor: 11.205

2.  Use of 3' untranslated sequences of human cDNAs for rapid chromosome assignment and conversion to STSs: implications for an expression map of the genome.

Authors:  A S Wilcox; A S Khan; J A Hopkins; J M Sikela
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

3.  A major locus (RN) affecting muscle glycogen content is located on pig chromosome 15.

Authors:  P Mariani; K Lundstrom; U Gustafsson; A C Enfalt; R K Juneja; L Andersson
Journal:  Mamm Genome       Date:  1996-01       Impact factor: 2.957

4.  Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones.

Authors:  A K Wintero; M Fredholm; W Davies
Journal:  Mamm Genome       Date:  1996-07       Impact factor: 2.957

5.  A somatic cell hybrid panel for pig regional gene mapping characterized by molecular cytogenetics.

Authors:  M Yerle; G Echard; A Robic; A Mairal; C Dubut-Fontana; J Riquet; P Pinton; D Milan; Y Lahbib-Mansais; J Gellin
Journal:  Cytogenet Cell Genet       Date:  1996

6.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

7.  Chromosomal distribution of 320 genes from a brain cDNA library.

Authors:  M H Polymeropoulos; H Xiao; J M Sikela; M Adams; J C Venter; C R Merril
Journal:  Nat Genet       Date:  1993-08       Impact factor: 38.330

8.  Identification of protein coding regions by database similarity search.

Authors:  W Gish; D J States
Journal:  Nat Genet       Date:  1993-03       Impact factor: 38.330

9.  Genetic mapping of quantitative trait loci for growth and fatness in pigs.

Authors:  L Andersson; C S Haley; H Ellegren; S A Knott; M Johansson; K Andersson; L Andersson-Eklund; I Edfors-Lilja; M Fredholm; I Hansson
Journal:  Science       Date:  1994-03-25       Impact factor: 47.728

10.  Isolation of four HSP70 genes in the pig and localization on chromosomes 7 and 14.

Authors:  M Nunes; M Yerle; F Dezeure; J Gellin; P Chardon; M Vaiman
Journal:  Mamm Genome       Date:  1993       Impact factor: 2.957

View more
  7 in total

1.  Comparative mapping in the pig: localization of 214 expressed sequence tags.

Authors:  Susanna Cirera; Claus B Jørgensen; Milena Sawera; Terje Raudsepp; Bhanu P Chowdhary; Merete Fredholm
Journal:  Mamm Genome       Date:  2003-06       Impact factor: 2.957

2.  Improvement of the porcine transcription map: localization of 33 genes, of which 24 are orthologous.

Authors:  A K Wintero; C B Jorgensen; A Robic; M Yerle; M Fredholm
Journal:  Mamm Genome       Date:  1998-05       Impact factor: 2.957

3.  Chromosomal assignments of 19 porcine cDNA sequences by FISH.

Authors:  P D Thomsen; A K Wintero; M Fredholm
Journal:  Mamm Genome       Date:  1998-05       Impact factor: 2.957

4.  A primary male autosomal linkage map of the horse genome.

Authors:  G Lindgren; K Sandberg; H Persson; S Marklund; M Breen; B Sandgren; J Carlstén; H Ellegren
Journal:  Genome Res       Date:  1998-09       Impact factor: 9.043

5.  Epistatic QTL pairs associated with meat quality and carcass composition traits in a porcine Duroc × Pietrain population.

Authors:  Christine Grosse-Brinkhaus; Elisabeth Jonas; Heiko Buschbell; Chirawath Phatsara; Dawit Tesfaye; Heinz Jüngst; Christian Looft; Karl Schellander; Ernst Tholen
Journal:  Genet Sel Evol       Date:  2010-10-26       Impact factor: 4.297

6.  A robust linkage map of the porcine autosomes based on gene-associated SNPs.

Authors:  Rikke K K Vingborg; Vivi R Gregersen; Bujie Zhan; Frank Panitz; Anette Høj; Kirsten K Sørensen; Lone B Madsen; Knud Larsen; Henrik Hornshøj; Xuefei Wang; Christian Bendixen
Journal:  BMC Genomics       Date:  2009-03-27       Impact factor: 3.969

7.  Genetic analysis of the cytoplasmic dynein subunit families.

Authors:  K Kevin Pfister; Paresh R Shah; Holger Hummerich; Andreas Russ; James Cotton; Azlina Ahmad Annuar; Stephen M King; Elizabeth M C Fisher
Journal:  PLoS Genet       Date:  2006-01       Impact factor: 5.917

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.