Literature DB >> 7601858

Evidence that operons tcb, tfd, and clc encode maleylacetate reductase, the fourth enzyme of the modified ortho pathway.

T Kasberg1, D L Daubaras, A M Chakrabarty, D Kinzelt, W Reineke.   

Abstract

The maleylacetate reductase from Pseudomonas sp. strain B13 functioning in the modified ortho pathway was purified and digested with trypsin. The polypeptides separated by high-performance liquid chromatography were sequenced. Alignments with the polypeptides predicted from the tfdF and tcbF genes located on plasmids pJP4 of the 2,4-dichlorophenoxyacetate-degrading Alcaligenes eutrophus JMP134 and pP51 of the 1,2,4-trichlorobenzene-degrading Pseudomonas sp. strain P51 as well as polypeptides predicted from the tftE gene located on the chromosome of the 2,4,5-trichlorophenoxyacetate-degrading Burkholderia cepacia AC1100 were obtained. In addition, the deduced protein sequence encoded by the nucleotide sequence downstream of clcD on plasmid pAC27 of the 3-chlorobenzoate-degrading Pseudomonas putida AC866 was tested for homology. Significant sequence similarities with the polypeptides encoded by the tfdF, tcbF, and tftE genes as well as the nucleotide sequence downstream of the clcD gene gave evidence that these genes might encode maleylacetate reductases. A NAD-binding motif in a beta alpha beta-element was detected.

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Year:  1995        PMID: 7601858      PMCID: PMC177112          DOI: 10.1128/jb.177.13.3885-3889.1995

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  25 in total

1.  Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region.

Authors:  J R van der Meer; A C Frijters; J H Leveau; R I Eggen; A J Zehnder; W M de Vos
Journal:  J Bacteriol       Date:  1991-06       Impact factor: 3.490

2.  Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint.

Authors:  R K Wierenga; P Terpstra; W G Hol
Journal:  J Mol Biol       Date:  1986-01-05       Impact factor: 5.469

3.  Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates.

Authors:  J R van der Meer; R I Eggen; A J Zehnder; W M de Vos
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

4.  Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4).

Authors:  R H Don; A J Weightman; H J Knackmuss; K N Timmis
Journal:  J Bacteriol       Date:  1985-01       Impact factor: 3.490

5.  Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4.

Authors:  E J Perkins; M P Gordon; O Caceres; P F Lurquin
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

6.  Nucleotide sequence and expression of clcD, a plasmid-borne dienelactone hydrolase gene from Pseudomonas sp. strain B13.

Authors:  B Frantz; K L Ngai; D K Chatterjee; L N Ornston; A M Chakrabarty
Journal:  J Bacteriol       Date:  1987-02       Impact factor: 3.490

7.  Complete dechlorination of tetrachlorohydroquinone by cell extracts of pentachlorophenol-induced Rhodococcus chlorophenolicus.

Authors:  J H Apajalahti; M S Salkinoja-Salonen
Journal:  J Bacteriol       Date:  1987-11       Impact factor: 3.490

8.  Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51.

Authors:  J R van der Meer; A R van Neerven; E J de Vries; W M de Vos; A J Zehnder
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

9.  Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation.

Authors:  B Frantz; A M Chakrabarty
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

10.  Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putida.

Authors:  W M Coco; R K Rothmel; S Henikoff; A M Chakrabarty
Journal:  J Bacteriol       Date:  1993-01       Impact factor: 3.490

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  15 in total

1.  Purification of hydroxyquinol 1,2-dioxygenase and maleylacetate reductase: the lower pathway of 2,4,5-trichlorophenoxyacetic acid metabolism by Burkholderia cepacia AC1100.

Authors:  D L Daubaras; K Saido; A M Chakrabarty
Journal:  Appl Environ Microbiol       Date:  1996-11       Impact factor: 4.792

2.  Cloning, characterization, and sequence analysis of the clcE gene encoding the maleylacetate reductase of Pseudomonas sp. strain B13.

Authors:  T Kasberg; V Seibert; M Schlömann; W Reineke
Journal:  J Bacteriol       Date:  1997-06       Impact factor: 3.490

3.  Monitoring key reactions in degradation of chloroaromatics by in situ (1)H nuclear magnetic resonance: solution structures of metabolites formed from cis-dienelactone.

Authors:  Dietmar H Pieper; Katrin Pollmann; Patricia Nikodem; Bernardo Gonzalez; Victor Wray
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

4.  Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4).

Authors:  D Pérez-Pantoja; L Guzmán; M Manzano; D H Pieper; B González
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

5.  Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis.

Authors:  K Miyauchi; Y Adachi; Y Nagata; M Takagi
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

6.  Capture of a catabolic plasmid that encodes only 2,4-dichlorophenoxyacetic acid:alpha-ketoglutaric acid dioxygenase (TfdA) by genetic complementation.

Authors:  E M Top; O V Maltseva; L J Forney
Journal:  Appl Environ Microbiol       Date:  1996-07       Impact factor: 4.792

7.  Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26.

Authors:  Ryo Endo; Mayuko Kamakura; Keisuke Miyauchi; Masao Fukuda; Yoshiyuki Ohtsubo; Masataka Tsuda; Yuji Nagata
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

8.  Identification of the Inducing Agent of the 2,4-Dichlorophenoxyacetic Acid Pathway Encoded by Plasmid pJP4.

Authors:  K Filer; A R Harker
Journal:  Appl Environ Microbiol       Date:  1997-01       Impact factor: 4.792

9.  In silico feasibility of novel biodegradation pathways for 1,2,4-trichlorobenzene.

Authors:  Stacey D Finley; Linda J Broadbelt; Vassily Hatzimanikatis
Journal:  BMC Syst Biol       Date:  2010-02-02

10.  Importance of different tfd genes for degradation of chloroaromatics by Ralstonia eutropha JMP134.

Authors:  Iris Plumeier; Danilo Pérez-Pantoja; Sabina Heim; Bernardo González; Dietmar H Pieper
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

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