Literature DB >> 7542475

Residence times of the buried water molecules in bovine pancreatic trypsin inhibitor and its G36S mutant.

V P Denisov1, B Halle, J Peters, H D Hörlein.   

Abstract

The three-dimensional structure of the bovine pancreatic trypsin inhibitor (BPTI) contains 4 internal water molecules, denoted W111, W112, W113, and W122, the latter being replaced by a seryl side chain in the BPTI(G36S) analogue. To investigate the effect of the exchange between these explicit water sites and the bulk solvent, we have measured water 17O and 2H nuclear magnetic relaxation in solutions of BPTI and the G36S mutant over the Larmor frequency range 2.6-49 MHz. A comparison of the data from the two nuclei shows unequivocally that the isolated buried water molecule, W122, of BPTI contributes only to 2H, but not to 17O relaxation, while the other 3 waters contribute fully to the relaxation of both nuclei. This demonstrates that the residence time of W122 is in the range 10-200 microseconds, while the residence times of W111-W113 are in the range 15 ns-1 microseconds. The slower exchange of W122 indicates that the functionally active region of BPTI, near the Cys14-Cys38 disulfide bond, is less flexible than the central region of BPTI, where the other 3 buried waters are located.

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Year:  1995        PMID: 7542475     DOI: 10.1021/bi00028a013

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  23 in total

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4.  Molecular dynamics free energy calculations to assess the possibility of water existence in protein nonpolar cavities.

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5.  Protein self-association induced by macromolecular crowding: a quantitative analysis by magnetic relaxation dispersion.

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Journal:  Biophys J       Date:  2005-01-21       Impact factor: 4.033

6.  Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study.

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7.  Minor groove hydration of DNA in aqueous solution: sequence-dependent next neighbor effect of the hydration lifetimes in d(TTAA)2 segments measured by NMR spectroscopy.

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8.  (13)C-NMR studies on disulfide bond isomerization in bovine pancreatic trypsin inhibitor (BPTI).

Authors:  Mitsuhiro Takeda; Yohei Miyanoiri; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2016-08-26       Impact factor: 2.835

9.  Structure of conkunitzin-S1, a neurotoxin and Kunitz-fold disulfide variant from cone snail.

Authors:  Catherine Y Dy; Pawel Buczek; Julita S Imperial; Grzegorz Bulaj; Martin P Horvath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-08-19

10.  Magnetic resonance water proton relaxation in protein solutions and tissue: T(1rho) dispersion characterization.

Authors:  Enn-Ling Chen; Raymond J Kim
Journal:  PLoS One       Date:  2010-01-05       Impact factor: 3.240

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