Literature DB >> 7521157

Genetic diversity of Datisca cannabina-compatible Frankia strains as determined by sequence analysis of the PCR-amplified 16S rRNA gene.

M S Mirza1, S Hameed, A D Akkermans.   

Abstract

The presence of Frankia strains in soil samples collected from northern areas of Pakistan was detected by inoculating Coriaria nepalensis and Datisca cannabina plants. The abundance of compatible Frankia strains in some areas was indicated by profuse nodulation of the host plants, whereas soil samples from other localities failed to result in nodulation. An oligonucleotide probe (COR/DAT) directed against the 16S rRNA gene of the endophytes of Coriaria and Datisca spp. that did not cross-react with the RNA gene of Frankia strains isolated from other hosts was developed. Genetic diversity among Frankia strains nodulating D. cannabina was determined by sequence analysis of the partial 16S rRNA gene amplified from nodules induced by soil samples from different localities by PCR. Four types of Frankia sequences and one non-Frankia sequence were detected by hybridization with a Frankia genus probe and the COR/DAT probe as well as by sequence analysis of the cloned PCR products.

Entities:  

Mesh：

Substances：

Year:  1994        PMID： 7521157      PMCID： PMC201658          DOI： 10.1128/aem.60.7.2371-2376.1994

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  18 in total

Review 1.  Compilation of small ribosomal subunit RNA sequences.

Authors:  J M Neefs; Y Van de Peer; P De Rijk; A Goris; R De Wachter
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

2.  Improved cloning efficiency of polymerase chain reaction (PCR) products after proteinase K digestion.

Authors:  J S Crowe; H J Cooper; M A Smith; M J Sims; D Parker; D Gewert
Journal:  Nucleic Acids Res       Date:  1991-01-11       Impact factor: 16.971

3.  Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences.

Authors:  S Nazaret; B Cournoyer; P Normand; P Simonet
Journal:  J Bacteriol       Date:  1991-07       Impact factor: 3.490

Review 4.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

5.  Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids.

Authors:  T M Embley; J Smida; E Stackebrandt
Journal:  J Gen Microbiol       Date:  1988-04

Review 6.  Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids.

Authors:  C R Woese; R Gutell; R Gupta; H F Noller
Journal:  Microbiol Rev       Date:  1983-12

7.  Genomic sequencing.

Authors:  G M Church; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

8.  A study of the capacity of soils to induce nodules in Alnus glutinosa (L.) Gaertn. and Myrica gale L., with special reference to the specificity of the endophytes.

Authors:  F B de Castro; C Miguel; C Rodriguez-Barrueco
Journal:  Ann Microbiol (Paris)       Date:  1976 Feb-Mar

9.  Genetic diversity in Sargasso Sea bacterioplankton.

Authors:  S J Giovannoni; T B Britschgi; C L Moyer; K G Field
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

10.  Isolation and Cultivation in vitro of the Actinomycete Causing Root Nodulation in Comptonia.

Authors:  D Callaham; P Deltredici; J G Torrey
Journal:  Science       Date:  1978-02-24       Impact factor: 47.728
View more
  5 in total

1.  Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata.

Authors:  Tomas Persson; David R Benson; Philippe Normand; Brian Vanden Heuvel; Petar Pujic; Olga Chertkov; Hazuki Teshima; David C Bruce; Chris Detter; Roxanne Tapia; Shunsheng Han; James Han; Tanja Woyke; Sam Pitluck; Len Pennacchio; Matt Nolan; Natalia Ivanova; Amrita Pati; Miriam L Land; Katharina Pawlowski; Alison M Berry
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

2.  Amplification of 16S rRNA genes from Frankia strains in root nodules of Ceanothus griseus, Coriaria arborea, Coriaria plumosa, Discaria toumatou, and Purshia tridentata.

Authors:  D R Benson; D W Stephens; M L Clawson; W B Silvester
Journal:  Appl Environ Microbiol       Date:  1996-08       Impact factor: 4.792

3.  First report on the occurrence of the uncultivated cluster 2 Frankia microsymbionts in soil outside the native actinorhizal host range area.

Authors:  Imen Nouioui; Imed Sbissi; Faten Ghodhbane-Gtari; Kawtar Fikri Benbrahim; Philippe Normand; Maher Gtari
Journal:  J Biosci       Date:  2013-11       Impact factor: 1.826

4.  Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.

Authors:  Tomas Persson; Kai Battenberg; Irina V Demina; Theoden Vigil-Stenman; Brian Vanden Heuvel; Petar Pujic; Marc T Facciotti; Elizabeth G Wilbanks; Anna O'Brien; Pascale Fournier; Maria Antonia Cruz Hernandez; Alberto Mendoza Herrera; Claudine Médigue; Philippe Normand; Katharina Pawlowski; Alison M Berry
Journal:  PLoS One       Date:  2015-05-28       Impact factor: 3.240

5.  Accumulation of and Response to Auxins in Roots and Nodules of the Actinorhizal Plant Datisca glomerata Compared to the Model Legume Medicago truncatula.

Authors:  Irina V Demina; Pooja Jha Maity; Anurupa Nagchowdhury; Jason L P Ng; Eric van der Graaff; Kirill N Demchenko; Thomas Roitsch; Ulrike Mathesius; Katharina Pawlowski
Journal:  Front Plant Sci       Date:  2019-09-24       Impact factor: 5.753
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.