Literature DB >> 22123767

Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata.

Tomas Persson1, David R Benson, Philippe Normand, Brian Vanden Heuvel, Petar Pujic, Olga Chertkov, Hazuki Teshima, David C Bruce, Chris Detter, Roxanne Tapia, Shunsheng Han, James Han, Tanja Woyke, Sam Pitluck, Len Pennacchio, Matt Nolan, Natalia Ivanova, Amrita Pati, Miriam L Land, Katharina Pawlowski, Alison M Berry.   

Abstract

Members of the noncultured clade of Frankia enter into root nodule symbioses with actinorhizal species from the orders Cucurbitales and Rosales. We report the genome sequence of a member of this clade originally from Pakistan but obtained from root nodules of the American plant Datisca glomerata without isolation in culture.

Entities:  

Mesh：

Year:  2011        PMID： 22123767      PMCID： PMC3232863          DOI： 10.1128/JB.06208-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Solexa Ltd.

Authors:  Simon Bennett
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

2.  Assessing the phylogeny of Frankia-actinorhizal plant nitrogen-fixing root nodule symbioses with Frankia 16S rRNA and glutamine synthetase gene sequences.

Authors:  Michael L Clawson; Aaron Bourret; David R Benson
Journal:  Mol Phylogenet Evol       Date:  2004-04       Impact factor: 4.286

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Nitrogenase Activity and Amounts of Nitrogenase Proteins in a Frankia-Alnus incana Symbiosis Subjected to Darkness.

Authors:  P O Lundquist; K Huss-Danell
Journal:  Plant Physiol       Date:  1991-03       Impact factor: 8.340

5.  Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae.

Authors:  P Normand; S Orso; B Cournoyer; P Jeannin; C Chapelon; J Dawson; L Evtushenko; A K Misra
Journal:  Int J Syst Bacteriol       Date:  1996-01

6.  Taxonomic note: implementation of the provisional status Candidatus for incompletely described procaryotes.

Authors:  R G Murray; E Stackebrandt
Journal:  Int J Syst Bacteriol       Date:  1995-01

7.  Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.

Authors:  Philippe Normand; Pascal Lapierre; Louis S Tisa; Johann Peter Gogarten; Nicole Alloisio; Emilie Bagnarol; Carla A Bassi; Alison M Berry; Derek M Bickhart; Nathalie Choisne; Arnaud Couloux; Benoit Cournoyer; Stephane Cruveiller; Vincent Daubin; Nadia Demange; Maria Pilar Francino; Eugene Goltsman; Ying Huang; Olga R Kopp; Laurent Labarre; Alla Lapidus; Celine Lavire; Joelle Marechal; Michele Martinez; Juliana E Mastronunzio; Beth C Mullin; James Niemann; Pierre Pujic; Tania Rawnsley; Zoe Rouy; Chantal Schenowitz; Anita Sellstedt; Fernando Tavares; Jeffrey P Tomkins; David Vallenet; Claudio Valverde; Luis G Wall; Ying Wang; Claudine Medigue; David R Benson
Journal:  Genome Res       Date:  2006-12-06       Impact factor: 9.043

8.  Genetic diversity of Datisca cannabina-compatible Frankia strains as determined by sequence analysis of the PCR-amplified 16S rRNA gene.

Authors:  M S Mirza; S Hameed; A D Akkermans
Journal:  Appl Environ Microbiol       Date:  1994-07       Impact factor: 4.792
  8 in total
  36 in total

Review 1.  The diversity of actinorhizal symbiosis.

Authors:  Katharina Pawlowski; Kirill N Demchenko
Journal:  Protoplasma       Date:  2012-03-08       Impact factor: 3.356

2.  What stories can the Frankia genomes start to tell us?

Authors:  Louis S Tisa; Nicholas Beauchemin; Maher Gtari; Arnab Sen; Luis G Wall
Journal:  J Biosci       Date:  2013-11       Impact factor: 1.826

3.  Characterization of pseudogenes in members of the order Frankineae.

Authors:  Saubashya Sur; Sangita Saha; Louis S Tisa; Asim K Bothra; Arnab Sen
Journal:  J Biosci       Date:  2013-11       Impact factor: 1.826

4.  The Influence of the Host Plant Is the Major Ecological Determinant of the Presence of Nitrogen-Fixing Root Nodule Symbiont Cluster II Frankia Species in Soil.

Authors:  Kai Battenberg; Jannah A Wren; Janell Hillman; Joseph Edwards; Liujing Huang; Alison M Berry
Journal:  Appl Environ Microbiol       Date:  2016-12-15       Impact factor: 4.792

Review 5.  Recent advances in actinorhizal symbiosis signaling.

Authors:  Emilie Froussart; Jocelyne Bonneau; Claudine Franche; Didier Bogusz
Journal:  Plant Mol Biol       Date:  2016-02-12       Impact factor: 4.076

6.  Micromonospora is a normal occupant of actinorhizal nodules.

Authors:  Lorena Carro; Petar Pujic; Martha E Trujillo; Philippe Normand
Journal:  J Biosci       Date:  2013-11       Impact factor: 1.826

7.  First report on the occurrence of the uncultivated cluster 2 Frankia microsymbionts in soil outside the native actinorhizal host range area.

Authors:  Imen Nouioui; Imed Sbissi; Faten Ghodhbane-Gtari; Kawtar Fikri Benbrahim; Philippe Normand; Maher Gtari
Journal:  J Biosci       Date:  2013-11       Impact factor: 1.826

Review 8.  Biological nitrogen fixation in non-legume plants.

Authors:  Carole Santi; Didier Bogusz; Claudine Franche
Journal:  Ann Bot       Date:  2013-03-10       Impact factor: 4.357

9.  Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis.

Authors:  Faten Ghodhbane-Gtari; Nicholas Beauchemin; David Bruce; Patrick Chain; Amy Chen; Karen Walston Davenport; Shweta Deshpande; Chris Detter; Teal Furnholm; Lynne Goodwin; Maher Gtari; Cliff Han; James Han; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Miriam L Land; Victor Markowitz; Kostas Mavrommatis; Matt Nolan; Imen Nouioui; Ioanna Pagani; Amrita Pati; Sam Pitluck; Catarina L Santos; Arnab Sen; Saubashya Sur; Ernest Szeto; Fernando Tavares; Hazuki Teshima; Subarna Thakur; Luis Wall; Tanja Woyke; Louis S Tisa
Journal:  Genome Announc       Date:  2013-03-14

10.  Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida.

Authors:  Arnab Sen; Nicholas Beauchemin; David Bruce; Patrick Chain; Amy Chen; Karen Walston Davenport; Shweta Deshpande; Chris Detter; Teal Furnholm; Faten Ghodbhane-Gtari; Lynne Goodwin; Maher Gtari; Cliff Han; James Han; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Miriam L Land; Victor Markowitz; Kostas Mavrommatis; Matt Nolan; Imen Nouioui; Ioanna Pagani; Amrita Pati; Sam Pitluck; Catarina L Santos; Saubashya Sur; Ernest Szeto; Fernando Tavares; Hazuki Teshima; Subarna Thakur; Luis Wall; Tanja Woyke; Jessie Wishart; Louis S Tisa
Journal:  Genome Announc       Date:  2013-03-21
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