Literature DB >> 7494635

The phylogeny of tRNAs seems to confirm the predictions of the coevolution theory of the origin of the genetic code.

M Di Giulio1.   

Abstract

An extensive analysis of the evolutionary relationships existing between transfer RNAs, performed using parsimony algorithms, is presented. After building up an estimate of the tRNA ancestral sequences, these sequences are then compared using certain methods. The results seem to suggest that the coevolution hypothesis (Wong, J.T., 1975, Proc. Natl. Acad. Sci. USA 72, 1909-1912) that sees the genetic code as a map of the biosynthetic relationships between amino acids is further supported by these results, as compared to the hypotheses that see the physicochemical properties of amino acids as the main adaptative theme that led to the structuring of the genetic code.

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Year:  1995        PMID: 7494635     DOI: 10.1007/bf01582024

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  40 in total

1.  The evolution of aminoacyl-tRNA synthetases, the biosynthetic pathways of amino acids and the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1992       Impact factor: 1.950

2.  The role of protein associated amino acid precursor molecules in the organization of genetic codons.

Authors:  A Miseta
Journal:  Physiol Chem Phys Med NMR       Date:  1989

3.  RNA evolution and the origins of life.

Authors:  G F Joyce
Journal:  Nature       Date:  1989-03-16       Impact factor: 49.962

4.  The phylogeny of tRNA sequences provides evidence for ambiguity reduction in the origin of the genetic code.

Authors:  W M Fitch; K Upper
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

5.  The genetic code and error transmission.

Authors:  C Alff-Steinberger
Journal:  Proc Natl Acad Sci U S A       Date:  1969-10       Impact factor: 11.205

6.  Further results on error minimization in the genetic code.

Authors:  N Goldman
Journal:  J Mol Evol       Date:  1993-12       Impact factor: 2.395

7.  On the optimization of the physicochemical distances between amino acids in the evolution of the genetic code.

Authors:  M Di Giulio; M R Capobianco; M Medugno
Journal:  J Theor Biol       Date:  1994-05-07       Impact factor: 2.691

8.  The phylogeny of tRNA molecules and the origin of the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1994-09       Impact factor: 1.950

9.  Role of the amino-acid "code" and of selection for conformation in the evolution of proteins.

Authors:  C J Epstein
Journal:  Nature       Date:  1966-04-02       Impact factor: 49.962

10.  Origin of glutaminyl-tRNA synthetase: an example of palimpsest?

Authors:  M Di Giulio
Journal:  J Mol Evol       Date:  1993-07       Impact factor: 2.395

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  13 in total

1.  Testing a biosynthetic theory of the genetic code: fact or artifact?

Authors:  T A Ronneberg; L F Landweber; S J Freeland
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

Review 2.  The case for an error minimizing standard genetic code.

Authors:  Stephen J Freeland; Tao Wu; Nick Keulmann
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

3.  No accident: genetic codes freeze in error-correcting patterns of the standard genetic code.

Authors:  David H Ardell; Guy Sella
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-11-29       Impact factor: 6.237

4.  Stable tRNA-based phylogenies using only 76 nucleotides.

Authors:  Jeremy Widmann; J Kirk Harris; Catherine Lozupone; Alexey Wolfson; Rob Knight
Journal:  RNA       Date:  2010-06-17       Impact factor: 4.942

Review 5.  The coevolution of genes and genetic codes: Crick's frozen accident revisited.

Authors:  Guy Sella; David H Ardell
Journal:  J Mol Evol       Date:  2006-07-12       Impact factor: 2.395

Review 6.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

7.  The beta-sheets of proteins, the biosynthetic relationships between amino acids, and the origin of the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1996-12       Impact factor: 1.950

8.  An Autotrophic Origin for the Coded Amino Acids is Concordant with the Coevolution Theory of the Genetic Code.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2016-10-14       Impact factor: 2.395

9.  The presence of codon-anticodon pairs in the acceptor stem of tRNAs.

Authors:  S Rodin; A Rodin; S Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-14       Impact factor: 11.205

10.  Evidence from glycine transfer RNA of a frozen accident at the dawn of the genetic code.

Authors:  Harold S Bernhardt; Warren P Tate
Journal:  Biol Direct       Date:  2008-12-17       Impact factor: 4.540

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