Literature DB >> 5261915

The genetic code and error transmission.

C Alff-Steinberger.   

Abstract

The amino acid substitutions resulting from single-base substitution in the natural genetic code have been compared with those resulting from single-base substitutions in computer-generated random codes. Considering the amino acid properties of molecular weight, polar requirement, number of dissociating groups, pK(1)', isoelectric point, and alpha-helix forming ability, it is concluded that, for the natural code, single-base substitution in the first position of the codon tends to result in the substitution of an amino acid more similar to the original amino acid than would be expected from a random code. In the natural code, the second position of the codon plays the largest role in determining the properties of the amino acid.

Mesh:

Year:  1969        PMID: 5261915      PMCID: PMC223384          DOI: 10.1073/pnas.64.2.584

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  7 in total

Review 1.  Suppression.

Authors:  L Gorini; J R Beckwith
Journal:  Annu Rev Microbiol       Date:  1966       Impact factor: 15.500

2.  On the fundamental nature and evolution of the genetic code.

Authors:  C R Woese; D H Dugre; S A Dugre; M Kondo; W C Saxinger
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1966

3.  The molecular basis for the genetic code.

Authors:  C R Woese; D H Dugre; W C Saxinger; S A Dugre
Journal:  Proc Natl Acad Sci U S A       Date:  1966-04       Impact factor: 11.205

4.  On the evolution of the genetic code.

Authors:  C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1965-12       Impact factor: 11.205

5.  The genetic code. 3.

Authors:  F H Crick
Journal:  Sci Am       Date:  1966-10       Impact factor: 2.142

6.  Amber suppressors: efficiency of chain propagation and suppressor specific amino acids.

Authors:  S Kaplan; A O Stretton; S Brenner
Journal:  J Mol Biol       Date:  1965-12       Impact factor: 5.469

7.  Codon--anticodon pairing: the wobble hypothesis.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1966-08       Impact factor: 5.469

  7 in total
  57 in total

Review 1.  The case for an error minimizing standard genetic code.

Authors:  Stephen J Freeland; Tao Wu; Nick Keulmann
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

2.  Codon usage decreases the error minimization within the genetic code.

Authors:  Chen-Tseh Zhu; Xiao-Bin Zeng; Wei-Da Huang
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

3.  The evolution of aminoacyl-tRNA synthetases, the biosynthetic pathways of amino acids and the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1992       Impact factor: 1.950

4.  No accident: genetic codes freeze in error-correcting patterns of the standard genetic code.

Authors:  David H Ardell; Guy Sella
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-11-29       Impact factor: 6.237

5.  Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection.

Authors:  Magnus Johansson; Jingji Zhang; Måns Ehrenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-21       Impact factor: 11.205

6.  The rules of variation: amino acid exchange according to the rotating circular genetic code.

Authors:  Fernando Castro-Chavez
Journal:  J Theor Biol       Date:  2010-04-03       Impact factor: 2.691

7.  Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code.

Authors:  J Gregory Caporaso; Michael Yarus; Rob Knight
Journal:  J Mol Evol       Date:  2005-10-06       Impact factor: 2.395

8.  Mitochondrial genetic codes evolve to match amino acid requirements of proteins.

Authors:  Jonathan Swire; Olivia P Judson; Austin Burt
Journal:  J Mol Evol       Date:  2005-01       Impact factor: 2.395

9.  Gene algebra from a genetic code algebraic structure.

Authors:  R Sanchez; E Morgado; R Grau
Journal:  J Math Biol       Date:  2005-07-13       Impact factor: 2.259

10.  Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential.

Authors:  Chérif F Matta
Journal:  J Comput Chem       Date:  2014-04-29       Impact factor: 3.376

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