Literature DB >> 7441777

Poly(U)-directed peptide-bond formation from the 2'(3')-glycyl esters of adenosine derivatives.

A L Weber, L E Orgel.   

Abstract

The self-condensation of 2'(3')-O-glycyl esters of adenosine, adenosine-5'-(O-methylphosphate) and P1, P2-diadenosine-5'-pyrophosphate in 6.2 mM solutions at pH 8.0 and -5 degrees C in the presence of 12.5 mM poly(U) yields approximately 3 times as much diketopiperazine as reactions without poly(U). As the concentration of 2'(3')-O-(glycyl)-P1, P2-diadenosine-5'-pyrophosphate is decreased from 6.2 mM to 1.5 mM the yield of diketopiperazine in the presence of poly(U) decreases slightly from 6.6% to 5.2%, whereas, in the absence of poly(U) the yield of diketopiperazine decreases substantially from 2.4% to 0.75%. The enhanced yield of diketopiperazine that is attributed to the template action of poly(U) is temperature dependent and is observed only at temperatures below 10 degrees C (5 degrees C to -5 degrees C) for 6.2 mM 2'(3')-O-(glycyl)-adenosine-5'-(O-methylphosphate) and below 23 degrees C (15 degrees C to -5 degrees C) for 6.2 mM 2'(3')-O-(glycyl)-P1, P2-diadenosine-5'-pyrophosphate. The absence of a template effect at high temperatures is attributed to the melting of the organized helices. The hydrolysis half-lives at pH 8.0 and -5 degrees C of 2'(3')-O-(glycyl)-adenosine, 2'(3')-O-(glycyl)-adenosine-5'-(O-methylphosphate), 2'(3')-O-(glycyl)-P1, P2-diadenosine-5'-pyrophosphate, and 5'-O-(glycyl)-adenosine in the presence of poly(U) are substantially larger than their half-lives in the absence of poly(U). The condensation of 2'(3')-O-(glycyl)-adenosine yields 5% of 5'-O-(glycyl)-adenosine in the presence of poly(U) compared to 0.7% in the absence of poly(U).

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Year:  1980        PMID: 7441777     DOI: 10.1007/bf01732065

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  17 in total

1.  A WATER-INSOLUBLE POLYANIONIC DERIVATIVE OF TRYPSIN. II. EFFECT OF THE POLYELECTROLYTE CARRIER ON THE KINETIC BEHAVIOR OF THE BOUND TRYPSIN.

Authors:  L GOLDSTEIN; Y LEVIN; E KATCHALSKI
Journal:  Biochemistry       Date:  1964-12       Impact factor: 3.162

2.  Effects of amino acid structure, ionic strength, and magnesium ion concentration on rates of nonenzymic hydrolysis of aminoacyl transfer ribonucleic acid.

Authors:  J E Strickland; K B Jacobson
Journal:  Biochemistry       Date:  1972-06-06       Impact factor: 3.162

3.  On the chemical reactivity of aminacyl-tRNA ester bond. 3. Influence of ionic strength, spermidine and methanol on the rate of hydrolysis.

Authors:  F Schuber; M Pinck
Journal:  Biochimie       Date:  1974       Impact factor: 4.079

4.  The enhancing effect of ionic strength and MgC12 on the rate of the non-enzymic hydrolysis of N-blocked aminoacyl-tRNA's.

Authors:  A Novogrodsky
Journal:  Biochim Biophys Acta       Date:  1971-02-11

5.  Base pairing equilibria between polynucleotides and complementary monomers.

Authors:  R J Davies; N Davidson
Journal:  Biopolymers       Date:  1971       Impact factor: 2.505

Review 6.  Amino acid esters of RNA, nucleosides and related compounds.

Authors:  H G Zachau; H Feldmann
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1965

7.  Template catalysis of acetyl transfer reactions.

Authors:  N M Chung; R Lohrmann; L E Orgel
Journal:  Biochim Biophys Acta       Date:  1971-01-28

8.  Complementary carrier peptide synthesis: general strategy and implications for prebiotic origin of peptide synthesis.

Authors:  J A Walder; R Y Walder; M J Heller; S M Freier; R L Letsinger; I M Klotz
Journal:  Proc Natl Acad Sci U S A       Date:  1979-01       Impact factor: 11.205

9.  On the chemical reactivity of aminoacyl-tRNA ester bond. 2. Aminolysis by tris and diethanolamine.

Authors:  F Schuber; M Pinck
Journal:  Biochimie       Date:  1974       Impact factor: 4.079

10.  The formation of dipeptides from amino acids and the 2'(3')-glycyl ester of an adenylate.

Authors:  A L Weber; L E Orgel
Journal:  J Mol Evol       Date:  1979-10       Impact factor: 2.395

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  11 in total

1.  Oligoglyceric acid synthesis by autocondensation of glyceroyl thioester.

Authors:  A L Weber
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

2.  Catalysis of amide synthesis by RNA phosphodiester and hydroxyl groups.

Authors:  Stacy I Chamberlin; Edward J Merino; Kevin M Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-28       Impact factor: 11.205

Review 3.  Experimental studies related to the origin of the genetic code and the process of protein synthesis--a review.

Authors:  J C Lacey; D W Mullins
Journal:  Orig Life       Date:  1983-03

4.  The use of gel electrophoresis to study the reactions of activated amino acids with oligonucleotides.

Authors:  G Zieboll; L E Orgel
Journal:  J Mol Evol       Date:  1994       Impact factor: 2.395

5.  Oligonucleotide-directed peptide synthesis in a ribosome- and ribozyme-free system.

Authors:  K Tamura; P Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

6.  Stereoselective aminoacylation of a dinucleoside monophosphate by the imidazolides of DL-alanine and N-(tert-butoxycarbonyl)-DL-alanine.

Authors:  A T Profy; D A Usher
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

7.  Peptide synthesis with a template-like RNA guide and aminoacyl phosphate adaptors.

Authors:  Koji Tamura; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-11       Impact factor: 11.205

Review 8.  Experimental studies on the origin of the genetic code and the process of protein synthesis: a review update.

Authors:  J C Lacey; N S Wickramasinghe; G W Cook
Journal:  Orig Life Evol Biosph       Date:  1992       Impact factor: 1.950

9.  The effect of poly(C) on the formation of peptide bones from the 2'(3')-glycyl ester of a guanosine nucleotide.

Authors:  A L Weber; L E Orgel
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

10.  The Hypothesis that the Genetic Code Originated in Coupled Synthesis of Proteins and the Evolutionary Predecessors of Nucleic Acids in Primitive Cells.

Authors:  Brian R Francis
Journal:  Life (Basel)       Date:  2015-02-11
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